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| | [[Category:Reaction]] | | [[Category:Reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULP3EPIM-RXN RIBULP3EPIM-RXN] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed_NA+ ExchangeSeed_NA+] == |
| | * direction: | | * direction: |
| | ** REVERSIBLE | | ** REVERSIBLE |
| − | * common name:
| |
| − | ** ribulose-phosphate_-3_chloroplastic
| |
| − | * ec number:
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| − | ** [http://enzyme.expasy.org/EC/5.1.3.1 EC-5.1.3.1]
| |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| | == Reaction Formula == | | == Reaction Formula == |
| | * With identifiers: | | * With identifiers: |
| − | ** 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c] | + | ** 1.0 [[NA+]][C-BOUNDARY] '''<=>''' 1.0 [[NA+]][e] |
| | * With common name(s): | | * With common name(s): |
| − | ** 1 D-ribulose 5-phosphate[c] '''<=>''' 1 D-xylulose 5-phosphate[c] | + | ** 1.0 Na+[C-BOUNDARY] '''<=>''' 1.0 Na+[e] |
| | | | |
| | == Genes associated with this reaction == | | == Genes associated with this reaction == |
| − | Genes have been associated with this reaction based on different elements listed below.
| |
| − | * [[Tiso_gene_10879]]
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| − | ** EXPERIMENTAL_ANNOTATION
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| − | ***EC-NUMBER
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| − | ** [[pantograph]]-[[athaliana]]
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| − | ** [[pantograph]]-[[athaliana]]
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| − | ** [[pantograph]]-[[esiliculosus]]
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| − | ** [[pantograph]]-[[creinhardtii]]
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| − | * [[Tiso_gene_19140]]
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| − | ** EXPERIMENTAL_ANNOTATION
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| − | ***EC-NUMBER
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| − | ** [[pantograph]]-[[synechocystis]]
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| − | ** [[pantograph]]-[[esiliculosus]]
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| − | * [[Tiso_gene_4754]]
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| − | ** IN-SILICO_ANNOTATION
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| − | ***EC-NUMBER
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| − | ** EXPERIMENTAL_ANNOTATION
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| − | ***EC-NUMBER
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| − | ** [[pantograph]]-[[athaliana]]
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| − | ** [[pantograph]]-[[athaliana]]
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| − | ** [[pantograph]]-[[creinhardtii]]
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| | == Pathways == | | == Pathways == |
| − | * [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
| |
| − | ** '''11''' reactions found over '''15''' reactions in the full pathway
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| − | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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| − | ** '''13''' reactions found over '''13''' reactions in the full pathway
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| − | * [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
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| − | ** '''3''' reactions found over '''3''' reactions in the full pathway
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| − | * [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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| − | ** '''10''' reactions found over '''10''' reactions in the full pathway
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| − | * [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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| − | ** '''7''' reactions found over '''9''' reactions in the full pathway
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| − | * [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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| − | ** '''14''' reactions found over '''18''' reactions in the full pathway
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| − | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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| − | ** '''11''' reactions found over '''12''' reactions in the full pathway
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| − | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * [[orthology]]: | + | * Category: [[manual]] |
| − | ** [[pantograph]]: | + | ** Source: [[manual-import_from_medium]] |
| − | *** [[creinhardtii]]
| + | *** Comment: [[added to manage seeds from boundary to extracellular compartment]] |
| − | *** [[synechocystis]]
| + | |
| − | *** [[esiliculosus]]
| + | |
| − | *** [[athaliana]]
| + | |
| − | * [[manual]]:
| + | |
| − | ** [[primary_network]] | + | |
| − | * [[annotation]]: | + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[experimental_annotation]]
| + | |
| − | *** [[in-silico_annotation]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13677 13677]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529]
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| − | * UNIPROT:
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| − | ** [http://www.uniprot.org/uniprot/P40117 P40117]
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| − | ** [http://www.uniprot.org/uniprot/Q9CEB9 Q9CEB9]
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| − | ** [http://www.uniprot.org/uniprot/P0AG07 P0AG07]
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| − | ** [http://www.uniprot.org/uniprot/Q9PI57 Q9PI57]
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| − | ** [http://www.uniprot.org/uniprot/Q9JUA9 Q9JUA9]
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| − | ** [http://www.uniprot.org/uniprot/P45455 P45455]
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| − | ** [http://www.uniprot.org/uniprot/Q43157 Q43157]
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| − | ** [http://www.uniprot.org/uniprot/Q43843 Q43843]
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| − | ** [http://www.uniprot.org/uniprot/P74061 P74061]
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| − | ** [http://www.uniprot.org/uniprot/O23782 O23782]
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| − | ** [http://www.uniprot.org/uniprot/P51012 P51012]
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| | {{#set: direction=REVERSIBLE}} | | {{#set: direction=REVERSIBLE}} |
| − | {{#set: common name=ribulose-phosphate_-3_chloroplastic}}
| + | {{#set: in pathway=}} |
| − | {{#set: ec number=EC-5.1.3.1}}
| + | |
| − | {{#set: gene associated=Tiso_gene_10879|Tiso_gene_19140|Tiso_gene_4754}}
| + | |
| − | {{#set: in pathway=P124-PWY|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P122-PWY|P185-PWY|NONOXIPENT-PWY}} | + | |
| − | {{#set: reconstruction category=orthology}}
| + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
| − | {{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
| + | |
| | {{#set: reconstruction category=manual}} | | {{#set: reconstruction category=manual}} |
| − | {{#set: reconstruction source=primary_network}} | + | {{#set: reconstruction source=manual-import_from_medium}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
| + | |
