Difference between revisions of "GLYCOCAT-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN] == * direction: ** LEFT-...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7250 PWY-7250] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7250 PWY-7250] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
−
** cryptochrome_photolyase_fad-binding_domain-containing_protein
+
** [2Fe-2S] iron-sulfur cluster biosynthesis
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/4.1.99.3 EC-4.1.99.3]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** [Fe-S] cluster biosynthesis
 +
** [2Fe-2S] cluster biosynthesis
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''10''' reactions found over '''10''' reactions in the full pathway
−
** 1 [[DNA-With-Pyrimidine-Dimers]][c] '''=>''' 1 [[DNA-Adjacent-Pyrimidines]][c]
+
* [[RXN-14381]]
−
* With common name(s):
+
** 0 associated gene:
−
**
+
** 2 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[annotation-in-silico_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[annotation-experimental_annotation]]
−
* [[Tiso_gene_15524]]
+
* [[RXN-14384]]
−
** [[pantograph]]-[[esiliculosus]]
+
** 3 associated gene(s):
−
* [[Tiso_gene_6546]]
+
*** [[Tiso_gene_11478]]
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_14710]]
−
***EC-NUMBER
+
*** [[Tiso_gene_4284]]
−
* [[Tiso_gene_6547]]
+
** 3 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
+
*** [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_15196]]
+
*** [[orthology-esiliculosus]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[RXN-14385]]
−
* [[Tiso_gene_15525]]
+
** 3 associated gene(s):
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[Tiso_gene_11478]]
−
* [[Tiso_gene_16321]]
+
*** [[Tiso_gene_4284]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[Tiso_gene_14710]]
−
* [[Tiso_gene_6548]]
+
** 3 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
+
*** [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** [[annotation-experimental_annotation]]
−
== Pathways  ==
+
*** [[orthology-esiliculosus]]
−
== Reconstruction information  ==
+
* [[RXN-14386]]
−
* Category: [[orthology]]
+
** 3 associated gene(s):
−
** Source: [[orthology-esiliculosus]]
+
*** [[Tiso_gene_11478]]
−
*** Tool: [[pantograph]]
+
*** [[Tiso_gene_14710]]
−
* Category: [[annotation]]
+
*** [[Tiso_gene_4284]]
−
** Source: [[annotation-in-silico_annotation]]
+
** 3 reconstruction source(s) associated:
−
*** Tool: [[pathwaytools]]
+
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-14387]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_15502]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-14388]]
 +
** 0 associated gene:
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-14389]]
 +
** 0 associated gene:
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-14390]]
 +
** 0 associated gene:
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-14391]]
 +
** 0 associated gene:
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-15881]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_11478]]
 +
*** [[Tiso_gene_14710]]
 +
*** [[Tiso_gene_4284]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2759}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00034 R00034]
+
{{#set: taxonomic range=TAX-2}}
−
* UNIPROT:
+
{{#set: taxonomic range=TAX-2157}}
−
** [http://www.uniprot.org/uniprot/P12769 P12769]
+
{{#set: common name=[2Fe-2S] iron-sulfur cluster biosynthesis}}
−
** [http://www.uniprot.org/uniprot/Q9JSP8 Q9JSP8]
+
{{#set: common name=[Fe-S] cluster biosynthesis|[2Fe-2S] cluster biosynthesis}}
−
** [http://www.uniprot.org/uniprot/Q9HQ46 Q9HQ46]
+
{{#set: reaction found=10}}
−
** [http://www.uniprot.org/uniprot/P12768 P12768]
+
{{#set: total reaction=10}}
−
** [http://www.uniprot.org/uniprot/P27526 P27526]
+
{{#set: completion rate=100.0}}
−
** [http://www.uniprot.org/uniprot/P25078 P25078]
+
−
** [http://www.uniprot.org/uniprot/Q43125 Q43125]
+
−
** [http://www.uniprot.org/uniprot/P40115 P40115]
+
−
** [http://www.uniprot.org/uniprot/Q28811 Q28811]
+
−
** [http://www.uniprot.org/uniprot/Q24443 Q24443]
+
−
** [http://www.uniprot.org/uniprot/Q91186 Q91186]
+
−
** [http://www.uniprot.org/uniprot/Q42696 Q42696]
+
−
** [http://www.uniprot.org/uniprot/P05066 P05066]
+
−
** [http://www.uniprot.org/uniprot/O24020 O24020]
+
−
** [http://www.uniprot.org/uniprot/O24374 O24374]
+
−
** [http://www.uniprot.org/uniprot/P00914 P00914]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=cryptochrome_photolyase_fad-binding_domain-containing_protein}}
+
−
{{#set: ec number=EC-4.1.99.3}}
+
−
{{#set: gene associated=Tiso_gene_15524|Tiso_gene_6546|Tiso_gene_6547|Tiso_gene_15196|Tiso_gene_15525|Tiso_gene_16321|Tiso_gene_6548}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:48, 21 March 2018

Pathway PWY-7250

  • taxonomic range:
  • common name:
    • [2Fe-2S] iron-sulfur cluster biosynthesis
  • Synonym(s):
    • [Fe-S] cluster biosynthesis
    • [2Fe-2S] cluster biosynthesis

Reaction(s) found

10 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

"2Fe-2S] iron-sulfur cluster biosynthesis" cannot be used as a page name in this wiki.
  • "Fe-S] cluster biosynthesis" cannot be used as a page name in this wiki.
  • "2Fe-2S] cluster biosynthesis" cannot be used as a page name in this wiki.


Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GLYCOCAT-PWY&oldid=30286"