Difference between revisions of "GLYCOLYSIS-TCA-GLYOX-BYPASS"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9539 RXN-9539] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-palmitoyl-[acyl-carrier...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9539 RXN-9539] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** L-lysine biosynthesis I
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** 3-oxo-palmitoyl-[acyl-carrier protein] synthase
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** 3-oxoacyl-synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
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** L-lysine and L-diaminopimelate biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''6''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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** 1 [[Myristoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-palmitoyl-ACPs]][c] '''+''' 1 [[ACP]][c]
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* [[ASPARTATEKIN-RXN]]
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* With common name(s):
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* [[DIAMINOPIMDECARB-RXN]]
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** 1 a myristoyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a 3-oxo-palmitoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
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* [[DIAMINOPIMEPIM-RXN]]
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* [[DIHYDRODIPICSYN-RXN]]
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== Genes associated with this reaction  ==
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* [[RXN-14014]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* [[Tiso_gene_5939]]
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCCDIAMINOPIMDESUCC-RXN SUCCDIAMINOPIMDESUCC-RXN]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCCINYLDIAMINOPIMTRANS-RXN SUCCINYLDIAMINOPIMTRANS-RXN]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=TETHYDPICSUCC-RXN TETHYDPICSUCC-RXN]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14485]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19302]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15991]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
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{{#set: common name=3-oxo-palmitoyl-[acyl-carrier protein] synthase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: common name=L-lysine biosynthesis I}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: common name=L-lysine and L-diaminopimelate biosynthesis}}
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{{#set: gene associated=Tiso_gene_5939|Tiso_gene_14485|Tiso_gene_19302|Tiso_gene_15991}}
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{{#set: reaction found=6}}
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{{#set: in pathway=PWY-5971}}
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{{#set: reaction not found=9}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: completion rate=67.0}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 19:18, 18 March 2018

Reaction RXN-9539

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxo-palmitoyl-[acyl-carrier protein] synthase
    • 3-oxoacyl-synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

"3-oxo-palmitoyl-[acyl-carrier protein] synthase" cannot be used as a page name in this wiki.




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