Difference between revisions of "GLYCOLYSIS-TCA-GLYOX-BYPASS"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9539 RXN-9539] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-palmitoyl-[acyl-carrier...")
(Created page with "Category:Gene == Gene Tiso_gene_6037 == * right end position: ** 12296 * transcription direction: ** POSITIVE * left end position: ** 10386 * centisome position: ** 82.141...")
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Gene]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9539 RXN-9539] ==
+
== Gene Tiso_gene_6037 ==
* direction:
+
* right end position:
** LEFT-TO-RIGHT
+
** 12296
* common name:
+
* transcription direction:
** 3-oxo-palmitoyl-[acyl-carrier protein] synthase
+
** POSITIVE
** 3-oxoacyl-synthase
+
* left end position:
* ec number:
+
** 10386
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
* centisome position:
 +
** 82.14172   
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
+
== Reactions associated ==
* With identifiers:
+
* Reaction: [[RXN0-1342]]
** 1 [[Myristoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-palmitoyl-ACPs]][c] '''+''' 1 [[ACP]][c]
+
* With common name(s):
+
** 1 a myristoyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a 3-oxo-palmitoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
+
 
+
== Genes associated with this reaction  ==
+
Genes have been associated with this reaction based on different elements listed below.
+
* [[Tiso_gene_5939]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** EXPERIMENTAL_ANNOTATION
+
***EC-NUMBER
+
* [[Tiso_gene_14485]]
+
** [[pantograph]]-[[synechocystis]]
+
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_19302]]
+
** [[pantograph]]-[[synechocystis]]
+
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_15991]]
+
** [[pantograph]]-[[athaliana]]
+
** [[pantograph]]-[[athaliana]]
+
** [[pantograph]]-[[esiliculosus]]
+
== Pathways  ==
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
** '''31''' reactions found over '''31''' reactions in the full pathway
+
== Reconstruction information  ==
+
* Category: [[orthology]]
+
** Source: [[orthology-athaliana]]
+
*** Tool: [[pantograph]]
+
** Source: [[orthology-synechocystis]]
+
*** Tool: [[pantograph]]
+
** Source: [[orthology-esiliculosus]]
+
*** Tool: [[pantograph]]
+
* Category: [[manual]]
+
** Source: [[manual-primary_network]]
+
* Category: [[annotation]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
*** Tool: [[pathwaytools]]
+
*** Assignment: automated-name-match
** Source: [[annotation-experimental_annotation]]
+
== Pathways associated ==
*** Tool: [[pathwaytools]]
+
* [[PWY-6700]]
 
== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=12296}}
{{#set: common name=3-oxo-palmitoyl-[acyl-carrier protein] synthase}}
+
{{#set: transcription direction=POSITIVE}}
{{#set: common name=3-oxoacyl-synthase}}
+
{{#set: left end position=10386}}
{{#set: ec number=EC-2.3.1.41}}
+
{{#set: centisome position=82.14172    }}
{{#set: gene associated=Tiso_gene_5939|Tiso_gene_14485|Tiso_gene_19302|Tiso_gene_15991}}
+
{{#set: reaction associated=RXN0-1342}}
{{#set: in pathway=PWY-5971}}
+
{{#set: pathway associated=PWY-6700}}
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:12, 21 March 2018

Gene Tiso_gene_6037

  • right end position:
    • 12296
  • transcription direction:
    • POSITIVE
  • left end position:
    • 10386
  • centisome position:
    • 82.14172
  • Synonym(s):

Reactions associated

Pathways associated

External links