Difference between revisions of "GLYCOPHOSPHORYL-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCOPHOSPHORYL-RXN GLYCOPHOSPHORYL-RXN] == * direction: ** REVERSIBLE * common name: ** thymidine_...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCOPHOSPHORYL-RXN GLYCOPHOSPHORYL-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 +
* common name:
 +
** thymidine_phosphorylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.1 EC-2.5.1.1]
+
** [http://enzyme.expasy.org/EC/2.4.1.1 EC-2.4.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-4211]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[GERANYL-PP]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[Pi]][c] '''+''' 1 [[Glycogens]][c] '''<=>''' 1 [[GLC-1-P]][c] '''+''' 1 [[CPD0-971]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 dimethylallyl diphosphate[c] '''+''' 1 isopentenyl diphosphate[c] '''<=>''' 1 geranyl diphosphate[c] '''+''' 1 diphosphate[c]
+
** 1 phosphate[c] '''+''' 1 a glycogen[c] '''<=>''' 1 &alpha;-D-glucopyranose 1-phosphate[c] '''+''' 1 an &alpha;-limit dextrin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13582]]
+
* Gene: [[Tiso_gene_1011]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_1035]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18201]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_11582]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2848]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_19542]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10317]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_16284]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_4719]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
+
* [[PWY-5941]], glycogen degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5941 PWY-5941]
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
+
 
** '''3''' reactions found over '''6''' reactions in the full pathway
 
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182]
+
* [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
−
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659]
+
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
*** [[synechocystis]]
+
−
*** [[athaliana]]
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P08524 P08524]
 
−
** [http://www.uniprot.org/uniprot/P05369 P05369]
 
−
** [http://www.uniprot.org/uniprot/P14324 P14324]
 
−
** [http://www.uniprot.org/uniprot/P46376 P46376]
 
−
** [http://www.uniprot.org/uniprot/Q45220 Q45220]
 
−
** [http://www.uniprot.org/uniprot/P49350 P49350]
 
−
** [http://www.uniprot.org/uniprot/Q50891 Q50891]
 
−
** [http://www.uniprot.org/uniprot/P49349 P49349]
 
−
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
 
−
** [http://www.uniprot.org/uniprot/P49351 P49351]
 
−
** [http://www.uniprot.org/uniprot/P49352 P49352]
 
−
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
 
−
** [http://www.uniprot.org/uniprot/O24241 O24241]
 
−
** [http://www.uniprot.org/uniprot/O24242 O24242]
 
−
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
 
−
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
 
−
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
 
−
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
 
−
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
 
−
** [http://www.uniprot.org/uniprot/P49353 P49353]
 
−
** [http://www.uniprot.org/uniprot/O04882 O04882]
 
−
** [http://www.uniprot.org/uniprot/O65004 O65004]
 
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: ec number=EC-2.5.1.1}}
+
{{#set: common name=thymidine_phosphorylase}}
−
{{#set: gene associated=Tiso_gene_13582|Tiso_gene_1035|Tiso_gene_18201|Tiso_gene_11582|Tiso_gene_2848|Tiso_gene_19542|Tiso_gene_10317|Tiso_gene_16284|Tiso_gene_4719}}
+
{{#set: ec number=EC-2.4.1.1}}
−
{{#set: in pathway=PWY-7736|PWY-6859|PWY-7709|PWY-7102|PWY-7182|PWY-7141|PWY-5123|PWY-5122|PWY-6383|PWY-7659|PWY-7410}}
+
{{#set: gene associated=Tiso_gene_1011}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-5941|GLYCOCAT-PWY}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=primary_network}}
+

Latest revision as of 20:18, 21 March 2018

Reaction GLYCOPHOSPHORYL-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • thymidine_phosphorylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 phosphate[c] + 1 a glycogen[c] <=> 1 α-D-glucopyranose 1-phosphate[c] + 1 an α-limit dextrin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5941, glycogen degradation II: PWY-5941
    • 3 reactions found over 6 reactions in the full pathway
  • GLYCOCAT-PWY, glycogen degradation I: GLYCOCAT-PWY
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GLYCOPHOSPHORYL-RXN&oldid=40751"