Difference between revisions of "GLYRIBONUCSYN-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLHOMOCYSCAT-PWY ADENOSYLHOMOCYSCAT-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribo...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLHOMOCYSCAT-PWY ADENOSYLHOMOCYSCAT-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** L-methionine salvage from L-homocysteine
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** phosphoribosylamine--glycine_ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.3.4.13 EC-6.3.4.13]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[HOMOCYSMETB12-RXN]]
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** 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_1602]]
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** 1 5-phospho-β-D-ribosylamine[c] '''+''' 1 glycine[c] '''+''' 1 ATP[c] '''=>''' 1 phosphate[c] '''+''' 1 N1-(5-phospho-β-D-ribosyl)glycinamide[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** [[manual-primary_network]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_1369]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[MMUM-RXN]]
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*** Assignment: EC-NUMBER
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** 1 associated gene(s):
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_5515]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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== Reaction(s) not found ==
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* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.5-RXN 2.1.1.5-RXN]
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** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
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** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
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** '''6''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-40674}}
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* RHEA:
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{{#set: common name=L-methionine salvage from L-homocysteine}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
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{{#set: reaction found=2}}
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* LIGAND-RXN:
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{{#set: total reaction=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
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{{#set: completion rate=67.0}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P07244 P07244]
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** [http://www.uniprot.org/uniprot/Q58347 Q58347]
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** [http://www.uniprot.org/uniprot/P12039 P12039]
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** [http://www.uniprot.org/uniprot/P21872 P21872]
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** [http://www.uniprot.org/uniprot/P15640 P15640]
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** [http://www.uniprot.org/uniprot/P00967 P00967]
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** [http://www.uniprot.org/uniprot/P16340 P16340]
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** [http://www.uniprot.org/uniprot/P22102 P22102]
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** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
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** [http://www.uniprot.org/uniprot/P43845 P43845]
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** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
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** [http://www.uniprot.org/uniprot/Q64737 Q64737]
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** [http://www.uniprot.org/uniprot/P20772 P20772]
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** [http://www.uniprot.org/uniprot/P26977 P26977]
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** [http://www.uniprot.org/uniprot/Q59492 Q59492]
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** [http://www.uniprot.org/uniprot/P74232 P74232]
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** [http://www.uniprot.org/uniprot/Q42804 Q42804]
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** [http://www.uniprot.org/uniprot/P52421 P52421]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoribosylamine--glycine_ligase}}
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{{#set: ec number=EC-6.3.4.13}}
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{{#set: gene associated=Tiso_gene_1369}}
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{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:13, 21 March 2018

Reaction GLYRIBONUCSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoribosylamine--glycine_ligase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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