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| − | == TISOGEM description ==
| + | {{#ask: [[Category:Reaction]] [[reconstruction source::gap-filling-gapfilling_solution_with_meneco_draft_medium]] |
| − | == Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
| + | | ?COMMON NAME |
| − | Model Summary: [[MEDIA:Tlutea_final.txt|summary]]
| + | | ?ec number |
| − | The automatic reconstruction of ''Tisocrysis_lutea'' results to a Genome scale [[MEDIA:Tlutea_lvl3.xml|Model]] containing 2796 reactions, 2745 metabolites, 2728 genes and 1212 pathways. This GeM was obtained based on the following sources:
| + | | ?reconstruction category |
| − | * Based on annotation data:
| + | | ?reconstruction tool |
| − | ** Tool: [http://bioinformatics.ai.sri.com/ptools/ Pathway tools]
| + | | ?reconstruction source |
| − | *** Creation of a metabolic network containing 2568 reactions
| + | | ?reconstruction comment |
| − | * Based on orthology data:
| + | | ?gene associated |
| − | ** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
| + | | ?in pathway |
| − | *** From template ''CREINHARDTII'' creation of a metabolic network containing: 558 reactions
| + | }} |
| − | *** From template ''SYNECHOCYSTIS'' creation of a metabolic network containing: 260 reactions
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| − | *** From template ''ATHALIANA'' creation of a metabolic network containing: 419 reactions
| + | |
| − | *** From template ''ESILICULOSUS'' creation of a metabolic network containing: 1191 reactions
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| − | * Based on expertise:
| + | |
| − | *** 314 reaction(s) added
| + | |
| − | * Based on gap-filling:
| + | |
| − | ** Tool: [https://pypi.python.org/pypi/meneco meneco]
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| − | *** 17 reaction(s) added
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| − | | + | |
| − | [[FILE:venn.png|frameless|border]]
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| − | == Collaborative curation ==
| + | |
| − | * Suggest reactions to add or remove:
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| − | ** Download this [[MEDIA:Add_delete_reaction.csv|form]]
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| − | * Suggest new reactions to create and add:
| + | |
| − | ** Download this [[MEDIA:Reaction_creator.csv|form]]
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| − | * '''Follow the examples given in the form(s) to correctly share your suggestions'''
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| − | * Send the filled form(s) to: CONTACT_MAIL
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