Difference between revisions of "H2Oth"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphomethylpyrimi...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2Oth H2Oth] == * direction: ** REVERSIBLE * common name: ** H2O transport, chloroplast * Synonym(s...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2Oth H2Oth] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** phosphomethylpyrimidine_kinase
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** H2O transport, chloroplast
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** thiamine_monophosphate_synthase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.7.4.7 EC-2.7.4.7]
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''=>''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[ADP]][c]
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** 1.0 [[WATER]][c] '''<=>''' 1.0 [[WATER]][h]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine[c] '''=>''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 ADP[c]
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** 1.0 H2O[c] '''<=>''' 1.0 H2O[h]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_2159]]
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* Gene: [[Tiso_gene_11818]]
−
** Source: [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_16224]]
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−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
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−
* Gene: [[Tiso_gene_17192]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_2160]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-athaliana]]
+
−
** Source: [[orthology-esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6890 PWY-6890]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19893 19893]
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{{#set: common name=H2O transport, chloroplast}}
−
* LIGAND-RXN:
+
{{#set: gene associated=Tiso_gene_11818}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
+
{{#set: in pathway=}}
−
* UNIPROT:
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
+
{{#set: reconstruction source=orthology-creinhardtii}}
−
** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
+
−
** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=phosphomethylpyrimidine_kinase}}
+
−
{{#set: common name=thiamine_monophosphate_synthase}}
+
−
{{#set: ec number=EC-2.7.4.7}}
+
−
{{#set: gene associated=Tiso_gene_2159|Tiso_gene_16224|Tiso_gene_17192|Tiso_gene_2160}}
+
−
{{#set: in pathway=PWY-6910|PWY-7282|PWY-6890|PWY-7356|PWY-7357}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:24, 21 March 2018

Reaction H2Oth

  • direction:
    • REVERSIBLE
  • common name:
    • H2O transport, chloroplast
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O[c] <=> 1.0 H2O[h]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=H2Oth&oldid=48442"