Difference between revisions of "HEME-BIOSYNTHESIS-II"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PREPHENATEDEHYDROG-RXN PREPHENATEDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [ht...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183963 TAX-...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PREPHENATEDEHYDROG-RXN PREPHENATEDEHYDROG-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183963 TAX-183963]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183924 TAX-183924]
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** [http://enzyme.expasy.org/EC/1.3.1.12 EC-1.3.1.12]
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* common name:
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** Entner-Doudoroff pathway III (semi-phosphorylative)
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''9''' reactions in the full pathway
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** 1 [[NAD]][c] '''+''' 1 [[PREPHENATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[P-HYDROXY-PHENYLPYRUVATE]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 NAD+[c] '''+''' 1 prephenate[c] '''=>''' 1 CO2[c] '''+''' 1 NADH[c] '''+''' 1 4-hydroxyphenylpyruvate[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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== Pathways  ==
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*** [[Tiso_gene_13317]]
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* [[PWY-7303]], 3-dimethylallyl-4-hydroxybenzoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7303 PWY-7303]
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** 7 reconstruction source(s) associated:
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** '''1''' reactions found over '''4''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[TYRSYN]], L-tyrosine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=TYRSYN TYRSYN]
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*** [[orthology-esiliculosus]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[orthology-athaliana]]
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* Category: [[manual]]
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*** [[orthology-synechocystis]]
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** Source: [[manual-primary_network]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[3PGAREARR-RXN]]
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** 16 associated gene(s):
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*** [[Tiso_gene_15048]]
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*** [[Tiso_gene_7201]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_5468]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_2667]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GLUCONOLACT-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_1947]]
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*** [[Tiso_gene_15098]]
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*** [[Tiso_gene_1948]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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* [[KDPGALDOL-RXN]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_12620]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=DEOXYGLUCONOKIN-RXN DEOXYGLUCONOKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUCONATE-DEHYDRATASE-RXN GLUCONATE-DEHYDRATASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE-1-DEHYDROGENASE-NADP+-RXN GLUCOSE-1-DEHYDROGENASE-NADP+-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-3443 RXN-3443]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-183963}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13869 13869]
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{{#set: taxonomic range=TAX-183924}}
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* LIGAND-RXN:
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{{#set: common name=Entner-Doudoroff pathway III (semi-phosphorylative)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01728 R01728]
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{{#set: reaction found=5}}
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* UNIPROT:
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/Q9CET9 Q9CET9]
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{{#set: completion rate=56.0}}
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** [http://www.uniprot.org/uniprot/Q9PIZ7 Q9PIZ7]
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** [http://www.uniprot.org/uniprot/P43902 P43902]
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** [http://www.uniprot.org/uniprot/P07023 P07023]
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** [http://www.uniprot.org/uniprot/Q04983 Q04983]
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** [http://www.uniprot.org/uniprot/Q02287 Q02287]
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** [http://www.uniprot.org/uniprot/P43901 P43901]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.3.1.12}}
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{{#set: in pathway=PWY-7303|TYRSYN}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=manual-primary_network}}
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Revision as of 16:20, 21 March 2018

Pathway PWY-2221

  • taxonomic range:
  • common name:
    • Entner-Doudoroff pathway III (semi-phosphorylative)
  • Synonym(s):

Reaction(s) found

5 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=HEME-BIOSYNTHESIS-II&oldid=33657"