Difference between revisions of "PWY-6361"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-COA-HYDRAT-RXN ENOYL-COA-HYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http:/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAG...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-COA-HYDRAT-RXN ENOYL-COA-HYDRAT-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
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* common name:
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** heme biosynthesis I (aerobic)
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''4''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c] '''=>''' 1 [[L-3-HYDROXYACYL-COA]][c]
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* [[PROTOHEMEFERROCHELAT-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 H2O[c] '''+''' 1 a trans-2-enoyl-CoA[c] '''=>''' 1 a (3S)-3-hydroxyacyl-CoA[c]
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*** [[Tiso_gene_3284]]
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*** [[Tiso_gene_15900]]
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== Genes associated with this reaction  ==
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** 6 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_14262]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_6885]]
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_16145]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PROTOPORGENOXI-RXN]]
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== Pathways  ==
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** 2 associated gene(s):
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* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
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*** [[Tiso_gene_11986]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[Tiso_gene_15401]]
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* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
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** 6 reconstruction source(s) associated:
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** '''3''' reactions found over '''6''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
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*** [[orthology-esiliculosus]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[PWY-5138]], unsaturated, even numbered fatty acid β-oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5138 PWY-5138]
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*** [[orthology-athaliana]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
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*** [[manual-primary_network]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[RXN0-1461]]
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== Reconstruction information  ==
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** 5 associated gene(s):
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* [[orthology]]:
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*** [[Tiso_gene_2247]]
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** [[pantograph]]:
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*** [[Tiso_gene_2246]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_13364]]
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*** [[Tiso_gene_13365]]
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*** [[Tiso_gene_3671]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[UROGENDECARBOX-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18743]]
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*** [[Tiso_gene_19684]]
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*** [[Tiso_gene_18744]]
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*** [[Tiso_gene_5173]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16105 16105]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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* LIGAND-RXN:
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* SGD-PATHWAY : HEME-BIOSYNTHESIS-II
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** [http://www.genome.jp/dbget-bin/www_bget?R02685 R02685]
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* PLASMOCYC : HEME-BIOSYNTHESIS-II
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* PIR:
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* HUMANCYC : HEME-BIOSYNTHESIS-II
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T17476 T17476]
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{{#set: taxonomic range=TAX-2}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
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{{#set: taxonomic range=TAX-2759}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S72706 S72706]
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{{#set: common name=heme biosynthesis I (aerobic)}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57651 S57651]
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{{#set: reaction found=4}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S54786 S54786]
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{{#set: total reaction=4}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41006 S41006]
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{{#set: completion rate=100.0}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36678 S36678]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S32607 S32607]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S06477 S06477]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0199 JX0199]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40678 I40678]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I37195 I37195]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69985 G69985]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E70893 E70893]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DWRTEP DWRTEP]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D70893 D70893]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D64890 D64890]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71435 C71435]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69893 C69893]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69370 C69370]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69304 C69304]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49613 A49613]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P21177 P21177]
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** [http://www.uniprot.org/uniprot/Q08426 Q08426]
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** [http://www.uniprot.org/uniprot/O29814 O29814]
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** [http://www.uniprot.org/uniprot/O29299 O29299]
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** [http://www.uniprot.org/uniprot/O34893 O34893]
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** [http://www.uniprot.org/uniprot/O23520 O23520]
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** [http://www.uniprot.org/uniprot/P76082 P76082]
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** [http://www.uniprot.org/uniprot/P64016 P64016]
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** [http://www.uniprot.org/uniprot/P07896 P07896]
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** [http://www.uniprot.org/uniprot/O53419 O53419]
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** [http://www.uniprot.org/uniprot/P94549 P94549]
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** [http://www.uniprot.org/uniprot/Q13825 Q13825]
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** [http://www.uniprot.org/uniprot/P45361 P45361]
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** [http://www.uniprot.org/uniprot/P28793 P28793]
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** [http://www.uniprot.org/uniprot/P14604 P14604]
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** [http://www.uniprot.org/uniprot/P22414 P22414]
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** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
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** [http://www.uniprot.org/uniprot/P34559 P34559]
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** [http://www.uniprot.org/uniprot/Q01373 Q01373]
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** [http://www.uniprot.org/uniprot/P55100 P55100]
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** [http://www.uniprot.org/uniprot/P53526 P53526]
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** [http://www.uniprot.org/uniprot/Q39659 Q39659]
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** [http://www.uniprot.org/uniprot/O52797 O52797]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-4.2.1.17}}
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{{#set: gene associated=Tiso_gene_14262|Tiso_gene_6885|Tiso_gene_16145}}
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{{#set: in pathway=PWY-5136|PWY-7007|FAO-PWY|PWY-5138|PWY66-391}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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Revision as of 19:24, 18 March 2018

Pathway HEME-BIOSYNTHESIS-II

  • taxonomic range:
  • common name:
    • heme biosynthesis I (aerobic)
  • Synonym(s):

Reaction(s) found

4 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

  • ECOCYC:
  • SGD-PATHWAY : HEME-BIOSYNTHESIS-II
  • PLASMOCYC : HEME-BIOSYNTHESIS-II
  • HUMANCYC : HEME-BIOSYNTHESIS-II




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