Difference between revisions of "PWY-7220"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNKIN-RXN PNKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyridoxal_kinase * ec numbe...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAG...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNKIN-RXN PNKIN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
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** pyridoxal_kinase
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** heme biosynthesis I (aerobic)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.35 EC-2.7.1.35]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''4''' reactions in the full pathway
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** 1 [[PYRIDOXINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXINE-5P]][c]
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* [[PROTOHEMEFERROCHELAT-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 pyridoxine[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 pyridoxine 5'-phosphate[c]
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*** [[Tiso_gene_3284]]
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*** [[Tiso_gene_15900]]
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== Genes associated with this reaction  ==
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** 6 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_6106]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[PROTOPORGENOXI-RXN]]
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== Pathways  ==
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** 2 associated gene(s):
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* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
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*** [[Tiso_gene_11986]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_15401]]
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
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** 6 reconstruction source(s) associated:
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** '''6''' reactions found over '''9''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
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*** [[orthology-esiliculosus]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[orthology-athaliana]]
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* Category: [[orthology]]
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*** [[orthology-synechocystis]]
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** Source: [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** Tool: [[pantograph]]
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* [[RXN0-1461]]
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** Source: [[orthology-creinhardtii]]
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** 5 associated gene(s):
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_3671]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_2247]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_13364]]
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* Category: [[annotation]]
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*** [[Tiso_gene_13365]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_2246]]
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*** Tool: [[pathwaytools]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[UROGENDECARBOX-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18743]]
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*** [[Tiso_gene_19684]]
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*** [[Tiso_gene_18744]]
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*** [[Tiso_gene_5173]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25108 25108]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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* LIGAND-RXN:
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* SGD-PATHWAY : HEME-BIOSYNTHESIS-II
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** [http://www.genome.jp/dbget-bin/www_bget?R01909 R01909]
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* HUMANCYC : HEME-BIOSYNTHESIS-II
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{{#set: direction=LEFT-TO-RIGHT}}
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* PLASMOCYC : HEME-BIOSYNTHESIS-II
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{{#set: common name=pyridoxal_kinase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: ec number=EC-2.7.1.35}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: gene associated=Tiso_gene_6106}}
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{{#set: common name=heme biosynthesis I (aerobic)}}
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{{#set: in pathway=PWY-7204|PWY-7282|PLPSAL-PWY}}
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{{#set: reaction found=4}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: total reaction=4}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: completion rate=100.0}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:20, 21 March 2018

Pathway HEME-BIOSYNTHESIS-II

  • taxonomic range:
  • common name:
    • heme biosynthesis I (aerobic)
  • Synonym(s):

Reaction(s) found

4 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

  • ECOCYC:
  • SGD-PATHWAY : HEME-BIOSYNTHESIS-II
  • HUMANCYC : HEME-BIOSYNTHESIS-II
  • PLASMOCYC : HEME-BIOSYNTHESIS-II




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