Difference between revisions of "IGPSYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-17347 CPD-17347] == * smiles: ** CCCCCC=CCC=CCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** indole3-glycerol_phosphat...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-17347 CPD-17347] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
−
* smiles:
+
* direction:
−
** CCCCCC=CCC=CCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=MNTSLNSVZACNCX-JPDDAYGWSA-J
+
 
* common name:
 
* common name:
−
** (3R)-hydroxy-(11Z,14Z)-icosa-11,14-dienoyl-CoA
+
** indole3-glycerol_phosphate_synthase
−
* molecular weight:
+
* ec number:
−
** 1069.99   
+
** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
 
* Synonym(s):
 
* Synonym(s):
−
** (3R)-hydroxy-20:2Δ11,14
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-16096]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[PROTON]][c] '''+''' 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
−
* [[RXN-16095]]
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 H+[c] '''+''' 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''=>''' 1 H2O[c] '''+''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 CO2[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_10298]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10297]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18384]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4521]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
== Pathways  ==
 +
* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=72193805 72193805]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
−
* CHEBI:
+
* LIGAND-RXN:
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=76408 76408]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
−
{{#set: smiles=CCCCCC=CCC=CCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
+
* UNIPROT:
−
{{#set: inchi key=InChIKey=MNTSLNSVZACNCX-JPDDAYGWSA-J}}
+
** [http://www.uniprot.org/uniprot/P42393 P42393]
−
{{#set: common name=(3R)-hydroxy-(11Z,14Z)-icosa-11,14-dienoyl-CoA}}
+
** [http://www.uniprot.org/uniprot/P20577 P20577]
−
{{#set: molecular weight=1069.99    }}
+
** [http://www.uniprot.org/uniprot/P18304 P18304]
−
{{#set: common name=(3R)-hydroxy-20:2Δ11,14}}
+
** [http://www.uniprot.org/uniprot/Q06121 Q06121]
−
{{#set: consumed by=RXN-16096}}
+
** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
−
{{#set: produced by=RXN-16095}}
+
** [http://www.uniprot.org/uniprot/P20578 P20578]
 +
** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
 +
** [http://www.uniprot.org/uniprot/Q58328 Q58328]
 +
** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
 +
** [http://www.uniprot.org/uniprot/P03964 P03964]
 +
** [http://www.uniprot.org/uniprot/P00910 P00910]
 +
** [http://www.uniprot.org/uniprot/P00909 P00909]
 +
** [http://www.uniprot.org/uniprot/P00911 P00911]
 +
** [http://www.uniprot.org/uniprot/P17217 P17217]
 +
** [http://www.uniprot.org/uniprot/P20409 P20409]
 +
** [http://www.uniprot.org/uniprot/P00937 P00937]
 +
** [http://www.uniprot.org/uniprot/P00908 P00908]
 +
** [http://www.uniprot.org/uniprot/P05328 P05328]
 +
** [http://www.uniprot.org/uniprot/P06531 P06531]
 +
** [http://www.uniprot.org/uniprot/P18483 P18483]
 +
** [http://www.uniprot.org/uniprot/P25170 P25170]
 +
** [http://www.uniprot.org/uniprot/P26938 P26938]
 +
** [http://www.uniprot.org/uniprot/P24773 P24773]
 +
** [http://www.uniprot.org/uniprot/Q01999 Q01999]
 +
** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
 +
** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
 +
** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
 +
** [http://www.uniprot.org/uniprot/Q92370 Q92370]
 +
** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
 +
** [http://www.uniprot.org/uniprot/P94327 P94327]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=indole3-glycerol_phosphate_synthase}}
 +
{{#set: ec number=EC-4.1.1.48}}
 +
{{#set: gene associated=Tiso_gene_10298|Tiso_gene_10297|Tiso_gene_18384|Tiso_gene_4521}}
 +
{{#set: in pathway=TRPSYN-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:54, 21 March 2018

Reaction IGPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • indole3-glycerol_phosphate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=IGPSYN-RXN&oldid=44549"