Difference between revisions of "LIGNOSTILBENE-ALPHA-BETA-DIOXYGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LIGNOSTILBENE-ALPHA-BETA-DIOXYGENASE-RXN LIGNOSTILBENE-ALPHA-BETA-DIOXYGENASE-RXN] == * direction:...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LIGNOSTILBENE-ALPHA-BETA-DIOXYGENASE-RXN LIGNOSTILBENE-ALPHA-BETA-DIOXYGENASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** formamidopyrimidine-dna_glycosylase
+
** 9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein
−
** endonuclease_iii
+
−
** dna-(apurinic_or_apyrimidinic_site)_lyase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
+
** [http://enzyme.expasy.org/EC/1.13.11.43 EC-1.13.11.43]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[3-terminal-unsaturated-sugars]][c]
+
** 1 [[12-BIS4-HYDROXY-3-METHOXYPHENYLETHYLE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 2 [[VANILLIN]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a DNA containing an apurinic/apyrimidinic site[c] '''=>''' 1 H+[c] '''+''' 1 a 5'-phospho-[DNA][c] '''+''' 1 a 3'-terminal unsaturated sugar[c]
+
** 1 4,4'-dihydroxy-3,3'-dimethoxystilbene[c] '''+''' 1 oxygen[c] '''=>''' 2 vanillin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14609]]
+
* Gene: [[Tiso_gene_7740]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_6558]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5102]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_1280]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17380]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21340 21340]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00043 R00043]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0AB83 P0AB83]
+
** [http://www.uniprot.org/uniprot/Q52008 Q52008]
−
** [http://www.uniprot.org/uniprot/P28352 P28352]
+
** [http://www.uniprot.org/uniprot/Q53353 Q53353]
−
** [http://www.uniprot.org/uniprot/Q58829 Q58829]
+
−
** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1]
+
−
** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0]
+
−
** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1]
+
−
** [http://www.uniprot.org/uniprot/P44319 P44319]
+
−
** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5]
+
−
** [http://www.uniprot.org/uniprot/P04418 P04418]
+
−
** [http://www.uniprot.org/uniprot/P27695 P27695]
+
−
** [http://www.uniprot.org/uniprot/P23196 P23196]
+
−
** [http://www.uniprot.org/uniprot/P22936 P22936]
+
−
** [http://www.uniprot.org/uniprot/P43138 P43138]
+
−
** [http://www.uniprot.org/uniprot/P95945 P95945]
+
−
** [http://www.uniprot.org/uniprot/P50525 P50525]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=formamidopyrimidine-dna_glycosylase}}
+
{{#set: common name=9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein}}
−
{{#set: common name=endonuclease_iii}}
+
{{#set: ec number=EC-1.13.11.43}}
−
{{#set: common name=dna-(apurinic_or_apyrimidinic_site)_lyase}}
+
{{#set: gene associated=Tiso_gene_7740}}
−
{{#set: ec number=EC-4.2.99.18}}
+
−
{{#set: gene associated=Tiso_gene_14609|Tiso_gene_6558|Tiso_gene_5102|Tiso_gene_1280|Tiso_gene_17380}}
+
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 21:23, 21 March 2018

Reaction LIGNOSTILBENE-ALPHA-BETA-DIOXYGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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