Difference between revisions of "Manual-reactions pwy-6475 tiso add"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDP-GLUCURONATE-4-EPIMERASE-RXN UDP-GLUCURONATE-4-EPIMERASE-RXN] == * direction: ** REVERSIBLE * ec...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.2.17-RXN 3.5.2.17-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 5-hydroxyisourate_hyd...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDP-GLUCURONATE-4-EPIMERASE-RXN UDP-GLUCURONATE-4-EPIMERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.2.17-RXN 3.5.2.17-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** 5-hydroxyisourate_hydrolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.1.3.6 EC-5.1.3.6]
+
** [http://enzyme.expasy.org/EC/3.5.2.17 EC-3.5.2.17]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[UDP-GLUCURONATE]][c] '''<=>''' 1 [[UDP-D-GALACTURONATE]][c]
+
** 1 [[5-HYDROXYISOURATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-5821]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP-&alpha;-D-glucuronate[c] '''<=>''' 1 UDP-&alpha;-D-galacturonate[c]
+
** 1 5-hydroxyisourate[c] '''+''' 1 H2O[c] '''=>''' 1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12322]]
+
* Gene: [[Tiso_gene_13181]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-4861]], UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4861 PWY-4861]
+
* [[PWY-7394]], urate degradation to allantoin II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7394 PWY-7394]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6415]], L-ascorbate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6415 PWY-6415]
+
* [[PWY-5691]], urate degradation to allantoin I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5691 PWY-5691]
−
** '''2''' reactions found over '''11''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11407 11407]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23736 23736]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01385 R01385]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06601 R06601]
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-5.1.3.6}}
+
{{#set: common name=5-hydroxyisourate_hydrolase}}
−
{{#set: gene associated=Tiso_gene_12322}}
+
{{#set: ec number=EC-3.5.2.17}}
−
{{#set: in pathway=PWY-4861|PWY-6415}}
+
{{#set: gene associated=Tiso_gene_13181}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-7394|PWY-5691}}
−
{{#set: reconstruction source=orthology-creinhardtii}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:09, 21 March 2018

Reaction 3.5.2.17-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5-hydroxyisourate_hydrolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 5-hydroxyisourate[c] + 1 H2O[c] => 1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7394, urate degradation to allantoin II: PWY-7394
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5691, urate degradation to allantoin I: PWY-5691
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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