Difference between revisions of "NADPHOS-DEPHOS-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCINE--TRNA-LIGASE-RXN LEUCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Gene == Gene Tiso_gene_671 == * right end position: ** 5622 * transcription direction: ** POSITIVE * left end position: ** 4000 * centisome position: ** 13.256446...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCINE--TRNA-LIGASE-RXN LEUCINE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_671 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5622
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* common name:
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* transcription direction:
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** leucine--trna_ligase
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** POSITIVE
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** ORF
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* left end position:
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* ec number:
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** 4000
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** [http://enzyme.expasy.org/EC/6.1.1.4 EC-6.1.1.4]
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* centisome position:
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** 13.256446   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[NAD+-ADP-RIBOSYLTRANSFERASE-RXN]]
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** 1 [[LEU]][c] '''+''' 1 [[LEU-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-LEU-tRNAs]][c]
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* With common name(s):
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** 1 L-leucine[c] '''+''' 1 a tRNAleu[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-leucyl-[tRNAleu][c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_11524]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15439]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5622}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11688 11688]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=4000}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03657 R03657]
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{{#set: centisome position=13.256446    }}
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* UNIPROT:
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{{#set: reaction associated=NAD+-ADP-RIBOSYLTRANSFERASE-RXN}}
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** [http://www.uniprot.org/uniprot/O27552 O27552]
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** [http://www.uniprot.org/uniprot/P56457 P56457]
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** [http://www.uniprot.org/uniprot/O51267 O51267]
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** [http://www.uniprot.org/uniprot/O83595 O83595]
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** [http://www.uniprot.org/uniprot/O84211 O84211]
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** [http://www.uniprot.org/uniprot/Q9Z930 Q9Z930]
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** [http://www.uniprot.org/uniprot/P47508 P47508]
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** [http://www.uniprot.org/uniprot/P36430 P36430]
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** [http://www.uniprot.org/uniprot/O66680 O66680]
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** [http://www.uniprot.org/uniprot/O67646 O67646]
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** [http://www.uniprot.org/uniprot/Q9ZDB1 Q9ZDB1]
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** [http://www.uniprot.org/uniprot/Q9WY15 Q9WY15]
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** [http://www.uniprot.org/uniprot/Q9PNK3 Q9PNK3]
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** [http://www.uniprot.org/uniprot/Q9JW39 Q9JW39]
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** [http://www.uniprot.org/uniprot/Q9ZJ63 Q9ZJ63]
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** [http://www.uniprot.org/uniprot/Q9JXT2 Q9JXT2]
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** [http://www.uniprot.org/uniprot/P43827 P43827]
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** [http://www.uniprot.org/uniprot/O58698 O58698]
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** [http://www.uniprot.org/uniprot/Q9CHB6 Q9CHB6]
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** [http://www.uniprot.org/uniprot/P26637 P26637]
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** [http://www.uniprot.org/uniprot/P75398 P75398]
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** [http://www.uniprot.org/uniprot/P73274 P73274]
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** [http://www.uniprot.org/uniprot/Q48955 Q48955]
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** [http://www.uniprot.org/uniprot/Q48964 Q48964]
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** [http://www.uniprot.org/uniprot/Q49051 Q49051]
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** [http://www.uniprot.org/uniprot/P11325 P11325]
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** [http://www.uniprot.org/uniprot/P07813 P07813]
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** [http://www.uniprot.org/uniprot/P10857 P10857]
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** [http://www.uniprot.org/uniprot/P15181 P15181]
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** [http://www.uniprot.org/uniprot/Q50192 Q50192]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=leucine--trna_ligase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-6.1.1.4}}
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{{#set: gene associated=Tiso_gene_11524|Tiso_gene_15439}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:10, 21 March 2018

Gene Tiso_gene_671

  • right end position:
    • 5622
  • transcription direction:
    • POSITIVE
  • left end position:
    • 4000
  • centisome position:
    • 13.256446
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=NADPHOS-DEPHOS-PWY&oldid=32683"