Difference between revisions of "OXIDATIVEPENT-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name:...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** 3-isopropylmalate dehydrogenase
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** pentose phosphate pathway (oxidative branch) I
 
* Synonym(s):
 
* Synonym(s):
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** β-isopropylmalic enzyme
 
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** threo-Ds-3-isopropylmalate dehydrogenase
 
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''3''' reactions in the full pathway
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** 1 [[NAD]][c] '''+''' 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-7100]][c] '''+''' 1 [[NADH]][c]
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* [[6PGLUCONOLACT-RXN]]
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* With common name(s):
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** 5 associated gene(s):
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** 1 NAD+[c] '''+''' 1 (2R,3S)-3-isopropylmalate[c] '''<=>''' 1 H+[c] '''+''' 1 (2S)-2-isopropyl-3-oxosuccinate[c] '''+''' 1 NADH[c]
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*** [[Tiso_gene_10799]]
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*** [[Tiso_gene_20412]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5901]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_15950]]
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* [[Tiso_gene_2920]]
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*** [[Tiso_gene_8585]]
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** EXPERIMENTAL_ANNOTATION
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** 6 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[synechocystis]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-athaliana]]
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== Pathways  ==
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*** [[manual-primary_network]]
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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*** [[orthology-creinhardtii]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[GLU6PDEHYDROG-RXN]]
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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** 2 associated gene(s):
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** '''6''' reactions found over '''7''' reactions in the full pathway
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*** [[Tiso_gene_16918]]
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== Reconstruction information  ==
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*** [[Tiso_gene_14877]]
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* [[orthology]]:
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** 4 reconstruction source(s) associated:
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** [[pantograph]]:
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*** [[manual-primary_network]]
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*** [[synechocystis]]
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*** [[annotation-in-silico_annotation]]
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*** [[esiliculosus]]
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*** [[orthology-synechocystis]]
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*** [[athaliana]]
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*** [[orthology-esiliculosus]]
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* [[annotation]]:
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* [[RXN-9952]]
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** [[pathwaytools]]:
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** 5 associated gene(s):
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*** [[experimental_annotation]]
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*** [[Tiso_gene_7157]]
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*** [[Tiso_gene_19590]]
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*** [[Tiso_gene_91]]
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*** [[Tiso_gene_777]]
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*** [[Tiso_gene_20238]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10892 10892]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04426 R04426]
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{{#set: taxonomic range=TAX-2}}
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* UNIPROT:
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{{#set: common name=pentose phosphate pathway (oxidative branch) I}}
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** [http://www.uniprot.org/uniprot/P05644 P05644]
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/P05645 P05645]
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{{#set: total reaction=3}}
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** [http://www.uniprot.org/uniprot/Q01987 Q01987]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/Q00412 Q00412]
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** [http://www.uniprot.org/uniprot/P08791 P08791]
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** [http://www.uniprot.org/uniprot/P30125 P30125]
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** [http://www.uniprot.org/uniprot/Q9PLW0 Q9PLW0]
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** [http://www.uniprot.org/uniprot/O66607 O66607]
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** [http://www.uniprot.org/uniprot/P12010 P12010]
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** [http://www.uniprot.org/uniprot/P04173 P04173]
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** [http://www.uniprot.org/uniprot/Q5SIY4 Q5SIY4]
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** [http://www.uniprot.org/uniprot/P24098 P24098]
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** [http://www.uniprot.org/uniprot/Q9JU79 Q9JU79]
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** [http://www.uniprot.org/uniprot/P43860 P43860]
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** [http://www.uniprot.org/uniprot/P41019 P41019]
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** [http://www.uniprot.org/uniprot/P54354 P54354]
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** [http://www.uniprot.org/uniprot/Q56268 Q56268]
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** [http://www.uniprot.org/uniprot/P29102 P29102]
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** [http://www.uniprot.org/uniprot/P37412 P37412]
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** [http://www.uniprot.org/uniprot/P23390 P23390]
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** [http://www.uniprot.org/uniprot/P29696 P29696]
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** [http://www.uniprot.org/uniprot/P41766 P41766]
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** [http://www.uniprot.org/uniprot/Q02143 Q02143]
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** [http://www.uniprot.org/uniprot/P34733 P34733]
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** [http://www.uniprot.org/uniprot/P50180 P50180]
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** [http://www.uniprot.org/uniprot/Q12591 Q12591]
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** [http://www.uniprot.org/uniprot/Q12590 Q12590]
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** [http://www.uniprot.org/uniprot/Q12592 Q12592]
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** [http://www.uniprot.org/uniprot/P07139 P07139]
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** [http://www.uniprot.org/uniprot/P41926 P41926]
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** [http://www.uniprot.org/uniprot/P48012 P48012]
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** [http://www.uniprot.org/uniprot/P87256 P87256]
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** [http://www.uniprot.org/uniprot/P87257 P87257]
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** [http://www.uniprot.org/uniprot/P73960 P73960]
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** [http://www.uniprot.org/uniprot/O86504 O86504]
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** [http://www.uniprot.org/uniprot/O85837 O85837]
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** [http://www.uniprot.org/uniprot/P18869 P18869]
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** [http://www.uniprot.org/uniprot/P34738 P34738]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=3-isopropylmalate dehydrogenase}}
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{{#set: common name=&beta;-isopropylmalic enzyme|threo-Ds-3-isopropylmalate dehydrogenase}}
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{{#set: gene associated=Tiso_gene_2920}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation}}
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Latest revision as of 20:39, 21 March 2018

Pathway OXIDATIVEPENT-PWY

  • taxonomic range:
  • common name:
    • pentose phosphate pathway (oxidative branch) I
  • Synonym(s):

Reaction(s) found

3 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links




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