Difference between revisions of "Orthology-synechocystis"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLGLUCOSAMACYLTRANS-RXN UDPNACETYLGLUCOSAMACYLTRANS-RXN] == * direction: ** LEFT-TO-RIGHT *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10814 RXN-10814] == * direction: ** REVERSIBLE * common name: ** aminotransferase ** aspartate_...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLGLUCOSAMACYLTRANS-RXN UDPNACETYLGLUCOSAMACYLTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10814 RXN-10814] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** acyl---udp-n-acetylglucosamine_acyltransferase
+
** aminotransferase
 +
** aspartate_aminotransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.129 EC-2.3.1.129]
+
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''+''' 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[UDP-OHMYR-ACETYLGLUCOSAMINE]][c]
+
** 1 [[PHE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP-N-acetyl-&alpha;-D-glucosamine[c] '''+''' 1 a (3R)-3-hydroxymyristoyl-[acp][c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-&alpha;-D-glucosamine[c]
+
** 1 L-phenylalanine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 2-oxo-3-phenylpropanoate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_19198]]
+
* [[Tiso_gene_13538]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17809]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_12889]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_6815]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_15680]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17718]]
 +
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
+
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[NAGLIPASYN-PWY]], lipid IVA biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=NAGLIPASYN-PWY NAGLIPASYN-PWY]
+
* [[PWY-6318]], L-phenylalanine degradation IV (mammalian, via side chain): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6318 PWY-6318]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[manual]]
−
** [[pathwaytools]]:
+
** Source: [[manual-primary_network]]
−
*** [[in-silico_annotation]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04567 R04567]
+
{{#set: common name=aminotransferase}}
−
* UNIPROT:
+
{{#set: common name=aspartate_aminotransferase}}
−
** [http://www.uniprot.org/uniprot/Q9PIM1 Q9PIM1]
+
{{#set: ec number=EC-2.6.1.1}}
−
** [http://www.uniprot.org/uniprot/Q9JX26 Q9JX26]
+
{{#set: gene associated=Tiso_gene_13538|Tiso_gene_17809|Tiso_gene_12889|Tiso_gene_6815|Tiso_gene_15680|Tiso_gene_17718}}
−
** [http://www.uniprot.org/uniprot/P43887 P43887]
+
{{#set: in pathway=PWY-6318}}
−
** [http://www.uniprot.org/uniprot/P32200 P32200]
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
** [http://www.uniprot.org/uniprot/P32201 P32201]
+
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/P0A722 P0A722]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=acyl---udp-n-acetylglucosamine_acyltransferase}}
+
−
{{#set: ec number=EC-2.3.1.129}}
+
−
{{#set: gene associated=Tiso_gene_19198}}
+
−
{{#set: in pathway=NAGLIPASYN-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Revision as of 01:18, 19 March 2018

Reaction RXN-10814

  • direction:
    • REVERSIBLE
  • common name:
    • aminotransferase
    • aspartate_aminotransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-phenylalanine[c] + 1 2-oxoglutarate[c] <=> 1 L-glutamate[c] + 1 2-oxo-3-phenylpropanoate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6318, L-phenylalanine degradation IV (mammalian, via side chain): PWY-6318
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Orthology-synechocystis&oldid=29669"