Difference between revisions of "Orthology-synechocystis"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10814 RXN-10814] == * direction: ** REVERSIBLE * common name: ** aminotransferase ** aspartate_...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.31-RXN 2.4.2.31-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** vacuolar_protein_...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10814 RXN-10814] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.31-RXN 2.4.2.31-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** aminotransferase
+
** ORF
−
** aspartate_aminotransferase
+
** vacuolar_protein_8
 +
** ankyrin_repeat_domain_protein
 +
** sir2-family_protein_hdac1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
+
** [http://enzyme.expasy.org/EC/2.4.2.31 EC-2.4.2.31]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PHE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[Protein-L-Arginines]][c] '''<=>''' 1 [[NIACINAMIDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-557]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-phenylalanine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 2-oxo-3-phenylpropanoate[c]
+
** 1 NAD+[c] '''+''' 1 a [protein]-L-arginine[c] '''<=>''' 1 nicotinamide[c] '''+''' 1 H+[c] '''+''' 1 a protein-N&omega;-(ADP-D-ribosyl)-L-arginine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13538]]
+
* Gene: [[Tiso_gene_18843]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_17809]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_13548]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_12889]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_17880]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_6815]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_16539]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_14179]]
−
* [[Tiso_gene_15680]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_17718]]
+
* Gene: [[Tiso_gene_16690]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_16538]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5361]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19256]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16775]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19047]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18844]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1416]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1521]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8768]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17938]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6318]], L-phenylalanine degradation IV (mammalian, via side chain): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6318 PWY-6318]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00555 R00555]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q03515 Q03515]
 +
** [http://www.uniprot.org/uniprot/P55806 P55806]
 +
** [http://www.uniprot.org/uniprot/P52961 P52961]
 +
** [http://www.uniprot.org/uniprot/P55807 P55807]
 +
** [http://www.uniprot.org/uniprot/Q92080 Q92080]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=aminotransferase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=aspartate_aminotransferase}}
+
{{#set: common name=vacuolar_protein_8}}
−
{{#set: ec number=EC-2.6.1.1}}
+
{{#set: common name=ankyrin_repeat_domain_protein}}
−
{{#set: gene associated=Tiso_gene_13538|Tiso_gene_17809|Tiso_gene_12889|Tiso_gene_6815|Tiso_gene_15680|Tiso_gene_17718}}
+
{{#set: common name=sir2-family_protein_hdac1}}
−
{{#set: in pathway=PWY-6318}}
+
{{#set: ec number=EC-2.4.2.31}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: gene associated=Tiso_gene_18843|Tiso_gene_13548|Tiso_gene_17880|Tiso_gene_16539|Tiso_gene_14179|Tiso_gene_16690|Tiso_gene_16538|Tiso_gene_5361|Tiso_gene_19256|Tiso_gene_16775|Tiso_gene_19047|Tiso_gene_18844|Tiso_gene_1416|Tiso_gene_1521|Tiso_gene_8768|Tiso_gene_17938}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 17:09, 21 March 2018

Reaction 2.4.2.31-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • vacuolar_protein_8
    • ankyrin_repeat_domain_protein
    • sir2-family_protein_hdac1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 a [protein]-L-arginine[c] <=> 1 nicotinamide[c] + 1 H+[c] + 1 a protein-Nω-(ADP-D-ribosyl)-L-arginine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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