Difference between revisions of "P124-PWY"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-101 CPD-101] == * smiles: ** C1(OCCCCC1)=O * inchi key: ** InChIKey=PAPBSGBWRJIAAV-UHFFFAOY...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Pathway]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-101 CPD-101] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY] ==
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* smiles:
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* taxonomic range:
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** C1(OCCCCC1)=O
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
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* inchi key:
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** InChIKey=PAPBSGBWRJIAAV-UHFFFAOYSA-N
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* common name:
 
* common name:
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** ε-caprolactone
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** Bifidobacterium shunt
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* molecular weight:
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** 114.144   
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* Synonym(s):
 
* Synonym(s):
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** 1-oxa-2-oxocycloheptane
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** Bifidum fermentation
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** 6-hexanolide
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** Bifidum pathway
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** hexano-6-lactone
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** fructose-6-phosphate pathway
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** Bifidum shunt
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** glucose fermentation to lactate (Bifidobacteria)
  
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== Reaction(s) known to consume the compound ==
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== Reaction(s) found ==
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== Reaction(s) known to produce the compound ==
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'''11''' reactions found over '''15''' reactions in the full pathway
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* [[CYCLOHEXANONE-MONOOXYGENASE-RXN]]
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* [[1TRANSKETO-RXN]]
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== Reaction(s) of unknown directionality ==
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** 2 associated gene(s):
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*** [[Tiso_gene_11559]]
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*** [[Tiso_gene_5008]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[2PGADEHYDRAT-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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*** [[Tiso_gene_5619]]
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*** [[Tiso_gene_13317]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[3PGAREARR-RXN]]
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** 16 associated gene(s):
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*** [[Tiso_gene_15048]]
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*** [[Tiso_gene_7201]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_5468]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_2667]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GAPOXNPHOSPHN-RXN]]
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** 5 associated gene(s):
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_235]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_6766]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GLUCOKIN-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_3107]]
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*** [[Tiso_gene_1303]]
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** 4 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_18264]]
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_14642]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_18217]]
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** 5 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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* [[RIBULP3EPIM-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_19140]]
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*** [[Tiso_gene_4754]]
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*** [[Tiso_gene_10879]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[TRANSALDOL-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_17601]]
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*** [[Tiso_gene_1831]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=FRUCTOSE-6-PHOSPHATE-PHOSPHOKETOLASE-RXN FRUCTOSE-6-PHOSPHATE-PHOSPHOKETOLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=L-LACTATE-DEHYDROGENASE-RXN L-LACTATE-DEHYDROGENASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOKETOLASE-RXN PHOSPHOKETOLASE-RXN]
 
== External links  ==
 
== External links  ==
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* CAS : 502-44-3
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{{#set: taxonomic range=TAX-201174}}
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* PUBCHEM:
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{{#set: common name=Bifidobacterium shunt}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=10401 10401]
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{{#set: common name=Bifidum fermentation|Bifidum pathway|fructose-6-phosphate pathway|Bifidum shunt|glucose fermentation to lactate (Bifidobacteria)}}
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* HMDB : HMDB60476
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{{#set: reaction found=11}}
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* LIGAND-CPD:
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{{#set: total reaction=15}}
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** [http://www.genome.jp/dbget-bin/www_bget?C01880 C01880]
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{{#set: completion rate=73.0}}
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* CHEMSPIDER:
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** [http://www.chemspider.com/Chemical-Structure.9972.html 9972]
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* CHEBI:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17915 17915]
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{{#set: smiles=C1(OCCCCC1)=O}}
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{{#set: inchi key=InChIKey=PAPBSGBWRJIAAV-UHFFFAOYSA-N}}
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{{#set: common name=ε-caprolactone}}
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−
{{#set: molecular weight=114.144    }}
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−
{{#set: common name=1-oxa-2-oxocycloheptane|6-hexanolide|hexano-6-lactone}}
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−
{{#set: produced by=CYCLOHEXANONE-MONOOXYGENASE-RXN}}
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Latest revision as of 20:44, 21 March 2018

Pathway P124-PWY

  • taxonomic range:
  • common name:
    • Bifidobacterium shunt
  • Synonym(s):
    • Bifidum fermentation
    • Bifidum pathway
    • fructose-6-phosphate pathway
    • Bifidum shunt
    • glucose fermentation to lactate (Bifidobacteria)

Reaction(s) found

11 reactions found over 15 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=P124-PWY&oldid=43568"