Difference between revisions of "P21-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14903 RXN-14903] == * direction: ** LEFT-TO-RIGHT * common name: ** proline_dehydrogenase * ec...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2093 TAX-2093...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14903 RXN-14903] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2093 TAX-2093]
 
* common name:
 
* common name:
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** proline_dehydrogenase
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** pentose phosphate pathway (partial)
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* ec number:
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** [http://enzyme.expasy.org/EC/1.5.5.2 EC-1.5.5.2]
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* Synonym(s):
 
* Synonym(s):
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** pentose phosphate pathway, Mycoplasma pneumonia
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''3''' reactions in the full pathway
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** 1 [[ETR-Quinones]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[ETR-Quinols]][c] '''+''' 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[PROTON]][c]
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* [[1TRANSKETO-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 an electron-transfer quinone[c] '''+''' 1 L-proline[c] '''=>''' 1 an electron-transfer quinol[c] '''+''' 1 (S)-1-pyrroline-5-carboxylate[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_11559]]
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*** [[Tiso_gene_5008]]
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== Genes associated with this reaction  ==
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** 5 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_18826]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_18825]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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* [[2TRANSKETO-RXN]]
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*** Assignment: EC-NUMBER
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_9762]]
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*** [[Tiso_gene_11559]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_5008]]
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*** Assignment: EC-NUMBER
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** 5 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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*** [[orthology-athaliana]]
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* [[PROUT-PWY]], L-proline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PROUT-PWY PROUT-PWY]
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*** [[orthology-creinhardtii]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[manual-primary_network]]
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* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
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*** [[annotation-in-silico_annotation]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[RIBULP3EPIM-RXN]]
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* [[PWY-5737]], (5R)-carbapenem carboxylate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5737 PWY-5737]
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** 3 associated gene(s):
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** '''1''' reactions found over '''6''' reactions in the full pathway
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*** [[Tiso_gene_19140]]
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* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
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*** [[Tiso_gene_4754]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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*** [[Tiso_gene_10879]]
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== Reconstruction information  ==
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** 7 reconstruction source(s) associated:
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* Category: [[orthology]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
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* Category: [[annotation]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Tool: [[pathwaytools]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2093}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01253 R01253]
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{{#set: common name=pentose phosphate pathway (partial)}}
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* UNIPROT:
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{{#set: common name=pentose phosphate pathway, Mycoplasma pneumonia}}
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** [http://www.uniprot.org/uniprot/P95629 P95629]
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/Q59206 Q59206]
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{{#set: total reaction=3}}
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** [http://www.uniprot.org/uniprot/P74275 P74275]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P10503 P10503]
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** [http://www.uniprot.org/uniprot/Q51873 Q51873]
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** [http://www.uniprot.org/uniprot/Q59426 Q59426]
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** [http://www.uniprot.org/uniprot/O24897 O24897]
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** [http://www.uniprot.org/uniprot/Q9K0Z9 Q9K0Z9]
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** [http://www.uniprot.org/uniprot/Q9JSY1 Q9JSY1]
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** [http://www.uniprot.org/uniprot/P09546 P09546]
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** [http://www.uniprot.org/uniprot/Q9PMG0 Q9PMG0]
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** [http://www.uniprot.org/uniprot/Q9ZN12 Q9ZN12]
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** [http://www.uniprot.org/uniprot/Q04499 Q04499]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=proline_dehydrogenase}}
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{{#set: ec number=EC-1.5.5.2}}
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{{#set: gene associated=Tiso_gene_18826|Tiso_gene_18825|Tiso_gene_9762}}
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{{#set: in pathway=PROUT-PWY|PWY-6922|PWY-5737|CITRULBIO-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:11, 21 March 2018

Pathway P21-PWY

  • taxonomic range:
  • common name:
    • pentose phosphate pathway (partial)
  • Synonym(s):
    • pentose phosphate pathway, Mycoplasma pneumonia

Reaction(s) found

3 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=P21-PWY&oldid=40074"