Difference between revisions of "P3-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydratase **...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=M5TRK M5TRK] == * direction: ** LEFT-TO-RIGHT * common name: ** S-methyl-5-thioribose kinase * Syno...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=M5TRK M5TRK] ==
 
* direction:
 
* direction:
** REVERSIBLE
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** 3-isopropylmalate dehydratase
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** S-methyl-5-thioribose kinase
** ORF
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* Synonym(s):
 
* Synonym(s):
** (2R,3S)-3-isopropylmalate hydro-lyase
 
** β-isopropylmalate dehydratase
 
** α-isopropylmalate isomerase
 
** 3-isopropylmalate hydro-lyase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-9451]][c]
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** 1.0 [[CPD-560]][c] '''+''' 1.0 [[ATP]][c] '''=>''' 1.0 [[PROTON]][c] '''+''' 1.0 [[CPD-444]][c] '''+''' 1.0 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
** 1 (2R,3S)-3-isopropylmalate[c] '''<=>''' 1 H2O[c] '''+''' 1 2-isopropylmaleate[c]
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** 1.0 S-methyl-5-thio-D-ribose[c] '''+''' 1.0 ATP[c] '''=>''' 1.0 H+[c] '''+''' 1.0 S-methyl-5-thio-&alpha;-D-ribose 1-phosphate[c] '''+''' 1.0 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[Tiso_gene_12778]]
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* [[Tiso_gene_11893]]
** IN-SILICO_ANNOTATION
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** [[pantograph]]-[[creinhardtii]]
***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
 
== Pathways  ==
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
 
** '''6''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
*** [[esiliculosus]]
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*** [[creinhardtii]]
*** [[athaliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
* RHEA:
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{{#set: direction=LEFT-TO-RIGHT}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
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{{#set: common name=S-methyl-5-thioribose kinase}}
* LIGAND-RXN:
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{{#set: gene associated=Tiso_gene_11893}}
** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
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{{#set: in pathway=}}
{{#set: direction=REVERSIBLE}}
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{{#set: common name=3-isopropylmalate dehydratase}}
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{{#set: common name=ORF}}
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{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
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{{#set: gene associated=Tiso_gene_12778}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction source=esiliculosus|athaliana}}
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{{#set: reconstruction source=creinhardtii}}
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 16:53, 10 January 2018

Reaction M5TRK

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • S-methyl-5-thioribose kinase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 S-methyl-5-thio-D-ribose[c] + 1.0 ATP[c] => 1.0 H+[c] + 1.0 S-methyl-5-thio-α-D-ribose 1-phosphate[c] + 1.0 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links