Difference between revisions of "PEPTIDOGLYCANSYN-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] == * direction: ** LEFT-TO-RIGHT * common name: ** all-trans retinyl-ester hyd...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDOGLYCANSYN-PWY PEPTIDOGLYCANSYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAG...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDOGLYCANSYN-PWY PEPTIDOGLYCANSYN-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** all-trans retinyl-ester hydrolase
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** peptidoglycan biosynthesis I (meso-diaminopimelate containing)
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** ORF
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** serine_esterase
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** alpha_beta_hydrolase
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** sialate_o-acetylesterase-like_protein
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** lysophospholipase
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** protein_chloroplastic
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** alpha_beta_hydrolase_fold_protein
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** para-nitrobenzyl_esterase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''4''' reactions in the full pathway
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** 1 [[All-trans-Retinyl-Esters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13524]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c]
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* [[PHOSNACMURPENTATRANS-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 an all-trans-retinyl ester[c] '''+''' 1 H2O[c] '''=>''' 1 all-trans-retinol[c] '''+''' 1 H+[c] '''+''' 1 a long-chain fatty acid[c]
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*** [[Tiso_gene_1604]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_1922]]
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* [[PWY-6387]]
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** IN-SILICO_ANNOTATION
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** 0 associated gene:
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***EC-NUMBER
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== Reaction(s) not found ==
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* [[Tiso_gene_2556]]
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* [http://metacyc.org/META/NEW-IMAGE?object=NACGLCTRANS-RXN NACGLCTRANS-RXN]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4606]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10066]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9429]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16518]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19778]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4650]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1538]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12686]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_1537]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17029]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_11351]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ECOCYC:
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{{#set: common name=all-trans retinyl-ester hydrolase}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PEPTIDOGLYCANSYN-PWY PEPTIDOGLYCANSYN-PWY]
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{{#set: common name=ORF}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=serine_esterase}}
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{{#set: common name=peptidoglycan biosynthesis I (meso-diaminopimelate containing)}}
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{{#set: common name=alpha_beta_hydrolase}}
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{{#set: reaction found=2}}
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{{#set: common name=sialate_o-acetylesterase-like_protein}}
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{{#set: total reaction=4}}
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{{#set: common name=lysophospholipase}}
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{{#set: completion rate=50.0}}
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{{#set: common name=protein_chloroplastic}}
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{{#set: common name=alpha_beta_hydrolase_fold_protein}}
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{{#set: common name=para-nitrobenzyl_esterase}}
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{{#set: ec number=EC-3.1.1.1}}
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{{#set: gene associated=Tiso_gene_1922|Tiso_gene_2556|Tiso_gene_4606|Tiso_gene_10066|Tiso_gene_9429|Tiso_gene_16518|Tiso_gene_19778|Tiso_gene_4650|Tiso_gene_1538|Tiso_gene_12686|Tiso_gene_1537|Tiso_gene_17029|Tiso_gene_11351}}
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{{#set: in pathway=PWY-6857}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:05, 21 March 2018

Pathway PEPTIDOGLYCANSYN-PWY

  • taxonomic range:
  • common name:
    • peptidoglycan biosynthesis I (meso-diaminopimelate containing)
  • Synonym(s):

Reaction(s) found

2 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PEPTIDOGLYCANSYN-PWY&oldid=39402"