Difference between revisions of "PROTOPORGENOXI-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMPSYN-RXN AMPSYN-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/4...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMPSYN-RXN AMPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** protoporphyrinogen_ix_oxidase_usually_abbreviated
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.3.2.2 EC-4.3.2.2]
+
** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ADENYLOSUCC]][c] '''<=>''' 1 [[FUM]][c] '''+''' 1 [[AMP]][c]
+
** 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 3 [[HYDROGEN-PEROXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 adenylo-succinate[c] '''<=>''' 1 fumarate[c] '''+''' 1 AMP[c]
+
** 1 protoporphyrinogen IX[c] '''+''' 3 oxygen[c] '''=>''' 1 protoporphyrin IX[c] '''+''' 3 hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_11986]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_15401]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
+
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[primary_network]]
+
** Source: [[orthology-athaliana]]
−
* [[annotation]]:
+
*** Tool: [[pantograph]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-synechocystis]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16853 16853]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01083 R01083]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P21265 P21265]
+
** [http://www.uniprot.org/uniprot/P50336 P50336]
−
** [http://www.uniprot.org/uniprot/Q58339 Q58339]
+
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
−
** [http://www.uniprot.org/uniprot/Q9CF40 Q9CF40]
+
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
−
** [http://www.uniprot.org/uniprot/Q9PJ88 Q9PJ88]
+
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
−
** [http://www.uniprot.org/uniprot/Q9JSP3 Q9JSP3]
+
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
−
** [http://www.uniprot.org/uniprot/P0AB89 P0AB89]
+
** [http://www.uniprot.org/uniprot/P51175 P51175]
−
** [http://www.uniprot.org/uniprot/O65180 O65180]
+
** [http://www.uniprot.org/uniprot/O24163 O24163]
−
** [http://www.uniprot.org/uniprot/P12047 P12047]
+
** [http://www.uniprot.org/uniprot/O24164 O24164]
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.uniprot.org/uniprot/O64384 O64384]
−
{{#set: ec number=EC-4.3.2.2}}
+
** [http://www.uniprot.org/uniprot/O64385 O64385]
−
{{#set: in pathway=PWY-7219}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reconstruction category=manual}}
+
{{#set: common name=protoporphyrinogen_ix_oxidase_usually_abbreviated}}
−
{{#set: reconstruction source=primary_network}}
+
{{#set: ec number=EC-1.3.3.4}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: gene associated=Tiso_gene_11986|Tiso_gene_15401}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:25, 21 March 2018

Reaction PROTOPORGENOXI-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • protoporphyrinogen_ix_oxidase_usually_abbreviated
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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