Difference between revisions of "PROTOPORGENOXI-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Ribonucleoside-Diphosphates Ribonucleoside-Diphosphates] == * common name: ** a ribonucleoside...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Ribonucleoside-Diphosphates Ribonucleoside-Diphosphates] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
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* direction:
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** a ribonucleoside diphosphate
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** protoporphyrinogen_ix_oxidase_usually_abbreviated
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
 
* Synonym(s):
 
* Synonym(s):
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** a nucleoside diphosphate
 
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** ribonucleoside diphosphate
 
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** nucleoside diphosphate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RIBONUCLEOSIDE-DIP-REDUCTI-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 3 [[HYDROGEN-PEROXIDE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 protoporphyrinogen IX[c] '''+''' 3 oxygen[c] '''=>''' 1 protoporphyrin IX[c] '''+''' 3 hydrogen peroxide[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_11986]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_15401]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: common name=a ribonucleoside diphosphate}}
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* RHEA:
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{{#set: common name=a nucleoside diphosphate|ribonucleoside diphosphate|nucleoside diphosphate}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
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{{#set: consumed by=RIBONUCLEOSIDE-DIP-REDUCTI-RXN}}
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P50336 P50336]
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** [http://www.uniprot.org/uniprot/Q49404 Q49404]
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** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
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** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
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** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
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** [http://www.uniprot.org/uniprot/P51175 P51175]
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** [http://www.uniprot.org/uniprot/O24163 O24163]
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** [http://www.uniprot.org/uniprot/O24164 O24164]
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** [http://www.uniprot.org/uniprot/O64384 O64384]
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** [http://www.uniprot.org/uniprot/O64385 O64385]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=protoporphyrinogen_ix_oxidase_usually_abbreviated}}
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{{#set: ec number=EC-1.3.3.4}}
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{{#set: gene associated=Tiso_gene_11986|Tiso_gene_15401}}
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{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:25, 21 March 2018

Reaction PROTOPORGENOXI-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • protoporphyrinogen_ix_oxidase_usually_abbreviated
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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