Difference between revisions of "PRPPAMIDOTRANS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] == * direction: ** LEFT-TO-RIGHT * common name: ** all-trans retinyl-ester hyd...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** short...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** all-trans retinyl-ester hydrolase
 
 
** ORF
 
** ORF
−
** serine_esterase
+
** short-chain_dehydrogenase_reductase
−
** alpha_beta_hydrolase
+
−
** sialate_o-acetylesterase-like_protein
+
−
** lysophospholipase
+
−
** protein_chloroplastic
+
−
** alpha_beta_hydrolase_fold_protein
+
−
** para-nitrobenzyl_esterase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
+
** [http://enzyme.expasy.org/EC/2.4.2.14 EC-2.4.2.14]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[All-trans-Retinyl-Esters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[CPD-13524]][c]
+
** 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''<=>''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[GLN]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an all-trans-retinyl ester[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 a long-chain fatty acid[c] '''+''' 1 all-trans-retinol[c]
+
** 1 L-glutamate[c] '''+''' 1 diphosphate[c] '''+''' 1 5-phospho-&beta;-D-ribosylamine[c] '''<=>''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c] '''+''' 1 H2O[c] '''+''' 1 L-glutamine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_11351]]
+
* Gene: [[Tiso_gene_1007]]
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_1537]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_4606]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_17029]]
+
** Source: [[annotation-experimental_annotation]]
−
** Source: [[annotation-in-silico_annotation]]
+
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_1538]]
+
* Gene: [[Tiso_gene_9914]]
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_9429]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_19778]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_4650]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_12686]]
+
** Source: [[orthology-creinhardtii]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_10066]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_16518]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_1922]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_2556]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
+
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
Line 77: Line 57:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=all-trans retinyl-ester hydrolase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14905 14905]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P28173 P28173]
 +
** [http://www.uniprot.org/uniprot/P35433 P35433]
 +
** [http://www.uniprot.org/uniprot/Q06203 Q06203]
 +
** [http://www.uniprot.org/uniprot/O29388 O29388]
 +
** [http://www.uniprot.org/uniprot/O67236 O67236]
 +
** [http://www.uniprot.org/uniprot/P65829 P65829]
 +
** [http://www.uniprot.org/uniprot/O57979 O57979]
 +
** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
 +
** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
 +
** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
 +
** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
 +
** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
 +
** [http://www.uniprot.org/uniprot/Q57657 Q57657]
 +
** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
 +
** [http://www.uniprot.org/uniprot/O26742 O26742]
 +
** [http://www.uniprot.org/uniprot/P43854 P43854]
 +
** [http://www.uniprot.org/uniprot/P35853 P35853]
 +
** [http://www.uniprot.org/uniprot/P41390 P41390]
 +
** [http://www.uniprot.org/uniprot/Q27601 Q27601]
 +
** [http://www.uniprot.org/uniprot/Q38999 Q38999]
 +
** [http://www.uniprot.org/uniprot/P04046 P04046]
 +
** [http://www.uniprot.org/uniprot/Q55621 Q55621]
 +
** [http://www.uniprot.org/uniprot/Q55038 Q55038]
 +
** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
 +
** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
 +
** [http://www.uniprot.org/uniprot/P52418 P52418]
 +
** [http://www.uniprot.org/uniprot/P52419 P52419]
 +
** [http://www.uniprot.org/uniprot/Q22134 Q22134]
 +
** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
 +
** [http://www.uniprot.org/uniprot/P00497 P00497]
 +
** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
 +
{{#set: direction=REVERSIBLE}}
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: common name=serine_esterase}}
+
{{#set: common name=short-chain_dehydrogenase_reductase}}
−
{{#set: common name=alpha_beta_hydrolase}}
+
{{#set: ec number=EC-2.4.2.14}}
−
{{#set: common name=sialate_o-acetylesterase-like_protein}}
+
{{#set: gene associated=Tiso_gene_1007|Tiso_gene_9914}}
−
{{#set: common name=lysophospholipase}}
+
{{#set: in pathway=PWY-6121|PWY-6122|PWY-7282|PWY-6277}}
−
{{#set: common name=protein_chloroplastic}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: common name=alpha_beta_hydrolase_fold_protein}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
−
{{#set: common name=para-nitrobenzyl_esterase}}
+
−
{{#set: ec number=EC-3.1.1.1}}
+
−
{{#set: gene associated=Tiso_gene_11351|Tiso_gene_1537|Tiso_gene_4606|Tiso_gene_17029|Tiso_gene_1538|Tiso_gene_9429|Tiso_gene_19778|Tiso_gene_4650|Tiso_gene_12686|Tiso_gene_10066|Tiso_gene_16518|Tiso_gene_1922|Tiso_gene_2556}}
+
−
{{#set: in pathway=PWY-6857}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:05, 21 March 2018

Reaction PRPPAMIDOTRANS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • short-chain_dehydrogenase_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-glutamate[c] + 1 diphosphate[c] + 1 5-phospho-β-D-ribosylamine[c] <=> 1 5-phospho-α-D-ribose 1-diphosphate[c] + 1 H2O[c] + 1 L-glutamine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PRPPAMIDOTRANS-RXN&oldid=39401"