Difference between revisions of "PUTDEG-PWY"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 T...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXAL-4-DEHYDROGENASE-RXN PYRIDOXAL-4-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXAL-4-DEHYDROGENASE-RXN PYRIDOXAL-4-DEHYDROGENASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** superpathway of fermentation (Chlamydomonas reinhardtii)
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** aldo_keto_reductase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.107 EC-1.1.1.107]
 
* Synonym(s):
 
* Synonym(s):
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** pyruvate fermentation (Chlamydomonas overview)
 
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** superpathway of fermentation from pyruvate (Chlamydomonas reinhardtii)
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''5''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
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* [[ACETALD-DEHYDROG-RXN]]
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** 1 [[PYRIDOXAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CPD-375]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_7649]]
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** 1 pyridoxal[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 4-pyridoxolactone[c]
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*** [[Tiso_gene_2052]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_13083]]
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* [[ALCOHOL-DEHYDROG-RXN]]
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** Source: [[annotation-experimental_annotation]]
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** 6 associated gene(s):
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_7649]]
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* Gene: [[Tiso_gene_6340]]
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*** [[Tiso_gene_18459]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_6562]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_6563]]
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* Gene: [[Tiso_gene_9885]]
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*** [[Tiso_gene_5424]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_5425]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 2 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY-5499]], vitamin B6 degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5499 PWY-5499]
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*** [[orthology-synechocystis]]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[HYDROG-RXN]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* Category: [[annotation]]
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*** [[Tiso_gene_4288]]
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** Source: [[annotation-experimental_annotation]]
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** 2 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pathwaytools]]
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* [[PWY-5480]]
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** 0 associated gene:
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* [[PWY-5486]]
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** 0 associated gene:
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=DLACTDEHYDROGNAD-RXN DLACTDEHYDROGNAD-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-5600 PWY-5600]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-5600 PWY-5600]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVFORMLY-RXN PYRUVFORMLY-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33090}}
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* RHEA:
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{{#set: common name=superpathway of fermentation (Chlamydomonas reinhardtii)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21339 21339]
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{{#set: common name=pyruvate fermentation (Chlamydomonas overview)|superpathway of fermentation from pyruvate (Chlamydomonas reinhardtii)}}
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* LIGAND-RXN:
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{{#set: reaction found=5}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01707 R01707]
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{{#set: total reaction=13}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=38.0}}
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{{#set: common name=aldo_keto_reductase}}
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{{#set: ec number=EC-1.1.1.107}}
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{{#set: gene associated=Tiso_gene_13083|Tiso_gene_6340|Tiso_gene_9885}}
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{{#set: in pathway=PWY-5499}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 16:01, 21 March 2018

Reaction PYRIDOXAL-4-DEHYDROGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • aldo_keto_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 pyridoxal[c] + 1 NAD+[c] => 1 H+[c] + 1 NADH[c] + 1 4-pyridoxolactone[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5499, vitamin B6 degradation: PWY-5499
    • 1 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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