Difference between revisions of "PWY-0"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHALCONE-ISOMERASE-RXN CHALCONE-ISOMERASE-RXN] == * direction: ** REVERSIBLE * common name: ** atp-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-COA-HYDRAT-RXN ENOYL-COA-HYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http:/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHALCONE-ISOMERASE-RXN CHALCONE-ISOMERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENOYL-COA-HYDRAT-RXN ENOYL-COA-HYDRAT-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** atp-dependent_rna_helicase_dhx30-like
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6]
+
** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Chalcones]][c] '''<=>''' 1 [[FLAVANONES]][c]
+
** 1 [[TRANS-D2-ENOYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[L-3-HYDROXYACYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a chalcone[c] '''<=>''' 1 a flavanone[c]
+
** 1 a trans-2-enoyl-CoA[c] '''+''' 1 H2O[c] '''=>''' 1 a (3S)-3-hydroxyacyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13414]]
+
* Gene: [[Tiso_gene_14262]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_16145]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6885]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5136]], fatty acid &beta;-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5138]], unsaturated, even numbered fatty acid &beta;-oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5138 PWY-5138]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[FAO-PWY]], fatty acid &beta;-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-391]], fatty acid &beta;-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[orthology]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16105 16105]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07344 R07344]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02685 R02685]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T17476 T17476]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S72706 S72706]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57651 S57651]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S54786 S54786]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41006 S41006]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36678 S36678]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S32607 S32607]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S06477 S06477]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0199 JX0199]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40678 I40678]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I37195 I37195]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69985 G69985]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E70893 E70893]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DWRTEP DWRTEP]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D70893 D70893]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D64890 D64890]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71435 C71435]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69893 C69893]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69370 C69370]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C69304 C69304]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49613 A49613]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P11650 P11650]
+
** [http://www.uniprot.org/uniprot/P21177 P21177]
−
** [http://www.uniprot.org/uniprot/P11651 P11651]
+
** [http://www.uniprot.org/uniprot/Q08426 Q08426]
−
** [http://www.uniprot.org/uniprot/P41088 P41088]
+
** [http://www.uniprot.org/uniprot/O29814 O29814]
−
** [http://www.uniprot.org/uniprot/P14298 P14298]
+
** [http://www.uniprot.org/uniprot/O29299 O29299]
−
** [http://www.uniprot.org/uniprot/Q42925 Q42925]
+
** [http://www.uniprot.org/uniprot/O34893 O34893]
−
** [http://www.uniprot.org/uniprot/Q42926 Q42926]
+
** [http://www.uniprot.org/uniprot/O23520 O23520]
−
** [http://www.uniprot.org/uniprot/Q08704 Q08704]
+
** [http://www.uniprot.org/uniprot/P76082 P76082]
−
** [http://www.uniprot.org/uniprot/P28012 P28012]
+
** [http://www.uniprot.org/uniprot/P64016 P64016]
−
** [http://www.uniprot.org/uniprot/P41089 P41089]
+
** [http://www.uniprot.org/uniprot/P07896 P07896]
−
** [http://www.uniprot.org/uniprot/O81980 O81980]
+
** [http://www.uniprot.org/uniprot/O53419 O53419]
−
** [http://www.uniprot.org/uniprot/O22604 O22604]
+
** [http://www.uniprot.org/uniprot/P94549 P94549]
−
** [http://www.uniprot.org/uniprot/O22651 O22651]
+
** [http://www.uniprot.org/uniprot/Q13825 Q13825]
−
** [http://www.uniprot.org/uniprot/Q43754 Q43754]
+
** [http://www.uniprot.org/uniprot/P45361 P45361]
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.uniprot.org/uniprot/P28793 P28793]
−
{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
+
** [http://www.uniprot.org/uniprot/P14604 P14604]
−
{{#set: ec number=EC-5.5.1.6}}
+
** [http://www.uniprot.org/uniprot/P22414 P22414]
−
{{#set: gene associated=Tiso_gene_13414}}
+
** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
−
{{#set: in pathway=}}
+
** [http://www.uniprot.org/uniprot/P34559 P34559]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q01373 Q01373]
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/P55100 P55100]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P53526 P53526]
 +
** [http://www.uniprot.org/uniprot/Q39659 Q39659]
 +
** [http://www.uniprot.org/uniprot/O52797 O52797]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-4.2.1.17}}
 +
{{#set: gene associated=Tiso_gene_14262|Tiso_gene_16145|Tiso_gene_6885}}
 +
{{#set: in pathway=PWY-5136|PWY-7007|PWY-5138|FAO-PWY|PWY66-391}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 16:22, 21 March 2018

Reaction ENOYL-COA-HYDRAT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5136, fatty acid β-oxidation II (peroxisome): PWY-5136
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7007, methyl ketone biosynthesis (engineered): PWY-7007
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-5138, unsaturated, even numbered fatty acid β-oxidation: PWY-5138
    • 1 reactions found over 5 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I: FAO-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (peroxisome): PWY66-391
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-0&oldid=33783"