Difference between revisions of "PWY-1622"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17779 RXN-17779] == * direction: ** LEFT-TO-RIGHT * common name: ** Acyl-CoA dehydrogenase ** a...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17779 RXN-17779] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** Acyl-CoA dehydrogenase
+
** formaldehyde assimilation I (serine pathway)
−
** acyl-_dehydrogenase
+
−
** acyl-CoA_dehydrogenase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.3.8 EC-1.3.8]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''5''' reactions found over '''13''' reactions in the full pathway
−
** 1 [[ETF-Oxidized]][c] '''+''' 1 [[CPD-19144]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-19170]][c] '''+''' 1 [[ETF-Reduced]][c]
+
* [[2PGADEHYDRAT-RXN]]
−
* With common name(s):
+
** 4 associated gene(s):
−
** 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 (7Z)-hexadecenoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 (2E,7Z)-hexadecenoyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
+
*** [[Tiso_gene_8720]]
−
 
+
*** [[Tiso_gene_14718]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_5619]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[Tiso_gene_13317]]
−
* [[Tiso_gene_6475]]
+
** 7 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
+
*** [[annotation-experimental_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** [[orthology-esiliculosus]]
−
* [[Tiso_gene_16113]]
+
*** [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** [[orthology-athaliana]]
−
***AUTOMATED-NAME-MATCH
+
*** [[orthology-synechocystis]]
−
* [[Tiso_gene_5449]]
+
*** [[manual-primary_network]]
−
** IN-SILICO_ANNOTATION
+
*** [[orthology-creinhardtii]]
−
***AUTOMATED-NAME-MATCH
+
* [[GLYOHMETRANS-RXN]]
−
* [[Tiso_gene_8271]]
+
** 4 associated gene(s):
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_16153]]
−
***AUTOMATED-NAME-MATCH
+
*** [[Tiso_gene_7776]]
−
* [[Tiso_gene_8272]]
+
*** [[Tiso_gene_18652]]
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_16154]]
−
***AUTOMATED-NAME-MATCH
+
** 4 reconstruction source(s) associated:
−
* [[Tiso_gene_16631]]
+
*** [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** [[manual-primary_network]]
−
***AUTOMATED-NAME-MATCH
+
*** [[annotation-in-silico_annotation]]
−
== Pathways  ==
+
*** [[orthology-esiliculosus]]
−
== Reconstruction information  ==
+
* [[MALATE-DEH-RXN]]
−
* [[annotation]]:
+
** 2 associated gene(s):
−
** [[pathwaytools]]:
+
*** [[Tiso_gene_2323]]
−
*** [[in-silico_annotation]]
+
*** [[Tiso_gene_1990]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[RXN-15513]]
 +
** 8 associated gene(s):
 +
*** [[Tiso_gene_7201]]
 +
*** [[Tiso_gene_14530]]
 +
*** [[Tiso_gene_16271]]
 +
*** [[Tiso_gene_9922]]
 +
*** [[Tiso_gene_2841]]
 +
*** [[Tiso_gene_2365]]
 +
*** [[Tiso_gene_14664]]
 +
*** [[Tiso_gene_9923]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-2881]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=GKI-RXN GKI-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYPYRUVATE-REDUCTASE-RXN HYDROXYPYRUVATE-REDUCTASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=MALATE--COA-LIGASE-RXN MALATE--COA-LIGASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=MALYL-COA-LYASE-RXN MALYL-COA-LYASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2802 RXN-2802]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: common name=Acyl-CoA dehydrogenase}}
+
{{#set: common name=formaldehyde assimilation I (serine pathway)}}
−
{{#set: common name=acyl-_dehydrogenase}}
+
{{#set: reaction found=5}}
−
{{#set: common name=acyl-CoA_dehydrogenase}}
+
{{#set: total reaction=13}}
−
{{#set: ec number=EC-1.3.8}}
+
{{#set: completion rate=38.0}}
−
{{#set: gene associated=Tiso_gene_6475|Tiso_gene_16113|Tiso_gene_5449|Tiso_gene_8271|Tiso_gene_8272|Tiso_gene_16631}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:20, 21 March 2018

Pathway PWY-1622

  • taxonomic range:
  • common name:
    • formaldehyde assimilation I (serine pathway)
  • Synonym(s):

Reaction(s) found

5 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-1622&oldid=40954"