Difference between revisions of "PWY-2201"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
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[[Category:Pathway]]
 
[[Category:Pathway]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201] ==
 
* taxonomic range:
 
* taxonomic range:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
−
** formaldehyde assimilation III (dihydroxyacetone cycle)
+
** folate transformations I
 
* Synonym(s):
 
* Synonym(s):
−
** dihydroxyacetone cycle
 
−
** xylulose-monophosphate cycle
 
  
 
== Reaction(s) found ==
 
== Reaction(s) found ==
−
  '''11''' reactions found over '''12''' reactions in the full pathway
+
  '''7''' reactions found over '''12''' reactions in the full pathway
−
* [[1TRANSKETO-RXN]]
+
* [[1.5.1.20-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
−
*** [[Tiso_gene_11559]]
+
*** [[Tiso_gene_14582]]
−
*** [[Tiso_gene_5008]]
+
*** [[Tiso_gene_16954]]
−
** 5 reconstruction source(s) associated:
+
** 4 reconstruction source(s) associated:
 
*** [[annotation-in-silico_annotation]]
 
*** [[annotation-in-silico_annotation]]
−
*** [[orthology-athaliana]]
 
−
*** [[annotation-experimental_annotation]]
 
−
*** [[orthology-synechocystis]]
 
 
*** [[manual-primary_network]]
 
*** [[manual-primary_network]]
−
* [[2TRANSKETO-RXN]]
+
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[FORMATETHFLIG-RXN]]
 
** 2 associated gene(s):
 
** 2 associated gene(s):
−
*** [[Tiso_gene_11559]]
+
*** [[Tiso_gene_432]]
−
*** [[Tiso_gene_5008]]
+
*** [[Tiso_gene_7582]]
−
** 5 reconstruction source(s) associated:
+
** 4 reconstruction source(s) associated:
 
*** [[annotation-experimental_annotation]]
 
*** [[annotation-experimental_annotation]]
−
*** [[orthology-athaliana]]
 
−
*** [[orthology-creinhardtii]]
 
 
*** [[manual-primary_network]]
 
*** [[manual-primary_network]]
 
*** [[annotation-in-silico_annotation]]
 
*** [[annotation-in-silico_annotation]]
−
* [[F16ALDOLASE-RXN]]
 
−
** 6 associated gene(s):
 
−
*** [[Tiso_gene_12272]]
 
−
*** [[Tiso_gene_65]]
 
−
*** [[Tiso_gene_9119]]
 
−
*** [[Tiso_gene_14568]]
 
−
*** [[Tiso_gene_9179]]
 
−
*** [[Tiso_gene_9118]]
 
−
** 5 reconstruction source(s) associated:
 
−
*** [[annotation-in-silico_annotation]]
 
−
*** [[manual-primary_network]]
 
−
*** [[orthology-creinhardtii]]
 
 
*** [[orthology-esiliculosus]]
 
*** [[orthology-esiliculosus]]
 +
* [[GLYOHMETRANS-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_16153]]
 +
*** [[Tiso_gene_7776]]
 +
*** [[Tiso_gene_18652]]
 +
*** [[Tiso_gene_16154]]
 +
** 4 reconstruction source(s) associated:
 
*** [[annotation-experimental_annotation]]
 
*** [[annotation-experimental_annotation]]
−
* [[F16BDEPHOS-RXN]]
 
−
** 7 associated gene(s):
 
−
*** [[Tiso_gene_15398]]
 
−
*** [[Tiso_gene_9435]]
 
−
*** [[Tiso_gene_16502]]
 
−
*** [[Tiso_gene_4905]]
 
−
*** [[Tiso_gene_8226]]
 
−
*** [[Tiso_gene_4904]]
 
−
*** [[Tiso_gene_3483]]
 
−
** 6 reconstruction source(s) associated:
 
−
*** [[annotation-experimental_annotation]]
 
−
*** [[orthology-esiliculosus]]
 
−
*** [[annotation-in-silico_annotation]]
 
−
*** [[orthology-athaliana]]
 
 
*** [[manual-primary_network]]
 
*** [[manual-primary_network]]
−
*** [[orthology-creinhardtii]]
 
−
* [[GAPOXNPHOSPHN-RXN]]
 
−
** 5 associated gene(s):
 
−
*** [[Tiso_gene_20000]]
 
−
*** [[Tiso_gene_235]]
 
−
*** [[Tiso_gene_10646]]
 
−
*** [[Tiso_gene_3344]]
 
−
*** [[Tiso_gene_6766]]
 
−
** 7 reconstruction source(s) associated:
 
−
*** [[annotation-experimental_annotation]]
 
−
*** [[orthology-esiliculosus]]
 
−
*** [[annotation-in-silico_annotation]]
 
−
*** [[orthology-athaliana]]
 
−
*** [[orthology-synechocystis]]
 
−
*** [[manual-primary_network]]
 
−
*** [[orthology-creinhardtii]]
 
−
* [[GLYCERONE-KINASE-RXN]]
 
−
** 1 associated gene(s):
 
−
*** [[Tiso_gene_14441]]
 
−
** 2 reconstruction source(s) associated:
 
 
*** [[annotation-in-silico_annotation]]
 
*** [[annotation-in-silico_annotation]]
 
*** [[orthology-esiliculosus]]
 
*** [[orthology-esiliculosus]]
−
* [[PHOSGLYPHOS-RXN]]
+
* [[HOMOCYSMETB12-RXN]]
−
** 6 associated gene(s):
+
−
*** [[Tiso_gene_3526]]
+
−
*** [[Tiso_gene_18264]]
+
−
*** [[Tiso_gene_3527]]
+
−
*** [[Tiso_gene_18263]]
+
−
*** [[Tiso_gene_12104]]
+
−
*** [[Tiso_gene_14642]]
+
−
** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
* [[RIB5PISOM-RXN]]
+
 
** 1 associated gene(s):
 
** 1 associated gene(s):
−
*** [[Tiso_gene_18217]]
+
*** [[Tiso_gene_1602]]
−
** 5 reconstruction source(s) associated:
+
** 4 reconstruction source(s) associated:
−
*** [[orthology-athaliana]]
+
 
*** [[annotation-in-silico_annotation]]
 
*** [[annotation-in-silico_annotation]]
−
*** [[orthology-synechocystis]]
 
−
*** [[orthology-esiliculosus]]
 
 
*** [[manual-primary_network]]
 
*** [[manual-primary_network]]
−
* [[RIBULP3EPIM-RXN]]
 
−
** 3 associated gene(s):
 
−
*** [[Tiso_gene_19140]]
 
−
*** [[Tiso_gene_4754]]
 
−
*** [[Tiso_gene_10879]]
 
−
** 7 reconstruction source(s) associated:
 
 
*** [[annotation-experimental_annotation]]
 
*** [[annotation-experimental_annotation]]
 
*** [[orthology-esiliculosus]]
 
*** [[orthology-esiliculosus]]
−
*** [[annotation-in-silico_annotation]]
+
* [[METHENYLTHFCYCLOHYDRO-RXN]]
−
*** [[orthology-athaliana]]
+
** 0 associated gene:
−
*** [[orthology-synechocystis]]
+
** 1 reconstruction source(s) associated:
 
*** [[manual-primary_network]]
 
*** [[manual-primary_network]]
−
*** [[orthology-creinhardtii]]
+
* [[METHYLENETHFDEHYDROG-NADP-RXN]]
−
* [[TRANSALDOL-RXN]]
+
 
** 2 associated gene(s):
 
** 2 associated gene(s):
−
*** [[Tiso_gene_17601]]
+
*** [[Tiso_gene_6004]]
−
*** [[Tiso_gene_1831]]
+
*** [[Tiso_gene_432]]
−
** 6 reconstruction source(s) associated:
+
** 3 reconstruction source(s) associated:
−
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 
*** [[orthology-esiliculosus]]
 
*** [[orthology-esiliculosus]]
−
*** [[annotation-in-silico_annotation]]
+
* [[RXN-5061]]
−
*** [[orthology-athaliana]]
+
** 1 associated gene(s):
−
*** [[manual-primary_network]]
+
*** [[Tiso_gene_4806]]
−
*** [[orthology-creinhardtii]]
+
** 1 reconstruction source(s) associated:
−
* [[TRIOSEPISOMERIZATION-RXN]]
+
−
** 4 associated gene(s):
+
−
*** [[Tiso_gene_19961]]
+
−
*** [[Tiso_gene_20000]]
+
−
*** [[Tiso_gene_19962]]
+
−
*** [[Tiso_gene_10646]]
+
−
** 7 reconstruction source(s) associated:
+
 
*** [[annotation-experimental_annotation]]
 
*** [[annotation-experimental_annotation]]
−
*** [[orthology-esiliculosus]]
 
−
*** [[annotation-in-silico_annotation]]
 
−
*** [[orthology-athaliana]]
 
−
*** [[orthology-synechocystis]]
 
−
*** [[manual-primary_network]]
 
−
*** [[orthology-creinhardtii]]
 
 
== Reaction(s) not found ==
 
== Reaction(s) not found ==
−
* [http://metacyc.org/META/NEW-IMAGE?object=FORMALDEHYDE-TRANSKETOLASE-RXN FORMALDEHYDE-TRANSKETOLASE-RXN]
+
* [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.15-RXN 1.5.1.15-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.19-RXN 2.1.1.19-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=5-FORMYL-THF-CYCLO-LIGASE-RXN 5-FORMYL-THF-CYCLO-LIGASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=FORMYLTHFDEFORMYL-RXN FORMYLTHFDEFORMYL-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=GCVMULTI-RXN GCVMULTI-RXN]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-4751}}
+
{{#set: taxonomic range=TAX-2759}}
−
{{#set: common name=formaldehyde assimilation III (dihydroxyacetone cycle)}}
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: common name=dihydroxyacetone cycle|xylulose-monophosphate cycle}}
+
{{#set: taxonomic range=TAX-2157}}
−
{{#set: reaction found=11}}
+
{{#set: common name=folate transformations I}}
 +
{{#set: reaction found=7}}
 
{{#set: total reaction=12}}
 
{{#set: total reaction=12}}
−
{{#set: completion rate=92.0}}
+
{{#set: completion rate=58.0}}

Latest revision as of 20:23, 21 March 2018

Pathway PWY-2201

Reaction(s) found

7 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-2201&oldid=41260"