Difference between revisions of "PWY-2221"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPDEHYRHAMREDUCT-RXN DTDPDEHYRHAMREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** m...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183963 TAX-...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPDEHYRHAMREDUCT-RXN DTDPDEHYRHAMREDUCT-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183963 TAX-183963]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183924 TAX-183924]
 
* common name:
 
* common name:
−
** methionine_adenosyltransferase_regulatory_beta_subunit-related
+
** Entner-Doudoroff pathway III (semi-phosphorylative)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.1.1.133 EC-1.1.1.133]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''5''' reactions found over '''9''' reactions in the full pathway
−
** 1 [[PROTON]][c] '''+''' 1 [[DTDP-DEOH-DEOXY-MANNOSE]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[DTDP-RHAMNOSE]][c] '''+''' 1 [[NADP]][c]
+
* [[2PGADEHYDRAT-RXN]]
−
* With common name(s):
+
** 4 associated gene(s):
−
** 1 H+[c] '''+''' 1 dTDP-4-dehydro-β-L-rhamnose[c] '''+''' 1 NADPH[c] '''=>''' 1 dTDP-β-L-rhamnose[c] '''+''' 1 NADP+[c]
+
*** [[Tiso_gene_8720]]
−
 
+
*** [[Tiso_gene_14718]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_5619]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[Tiso_gene_13317]]
−
* [[Tiso_gene_4472]]
+
** 7 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
+
*** [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** [[orthology-esiliculosus]]
−
== Pathways  ==
+
*** [[annotation-in-silico_annotation]]
−
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY]
+
*** [[orthology-athaliana]]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
*** [[orthology-synechocystis]]
−
== Reconstruction information  ==
+
*** [[manual-primary_network]]
−
* [[annotation]]:
+
*** [[orthology-creinhardtii]]
−
** [[pathwaytools]]:
+
* [[3PGAREARR-RXN]]
−
*** [[in-silico_annotation]]
+
** 16 associated gene(s):
 +
*** [[Tiso_gene_15048]]
 +
*** [[Tiso_gene_7201]]
 +
*** [[Tiso_gene_9922]]
 +
*** [[Tiso_gene_2841]]
 +
*** [[Tiso_gene_14530]]
 +
*** [[Tiso_gene_16754]]
 +
*** [[Tiso_gene_2365]]
 +
*** [[Tiso_gene_16271]]
 +
*** [[Tiso_gene_5468]]
 +
*** [[Tiso_gene_20311]]
 +
*** [[Tiso_gene_14664]]
 +
*** [[Tiso_gene_15391]]
 +
*** [[Tiso_gene_14212]]
 +
*** [[Tiso_gene_10516]]
 +
*** [[Tiso_gene_9923]]
 +
*** [[Tiso_gene_2667]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[GLUCONOLACT-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_1947]]
 +
*** [[Tiso_gene_15098]]
 +
*** [[Tiso_gene_1948]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
* [[KDPGALDOL-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_12620]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-esiliculosus]]
 +
* [[PEPDEPHOS-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_18206]]
 +
*** [[Tiso_gene_14504]]
 +
*** [[Tiso_gene_974]]
 +
*** [[Tiso_gene_14505]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=DEOXYGLUCONOKIN-RXN DEOXYGLUCONOKIN-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=GLUCONATE-DEHYDRATASE-RXN GLUCONATE-DEHYDRATASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE-1-DEHYDROGENASE-NADP+-RXN GLUCOSE-1-DEHYDROGENASE-NADP+-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-3443 RXN-3443]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-183963}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21796 21796]
+
{{#set: taxonomic range=TAX-183924}}
−
* LIGAND-RXN:
+
{{#set: common name=Entner-Doudoroff pathway III (semi-phosphorylative)}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02777 R02777]
+
{{#set: reaction found=5}}
−
* UNIPROT:
+
{{#set: total reaction=9}}
−
** [http://www.uniprot.org/uniprot/Q9JV74 Q9JV74]
+
{{#set: completion rate=56.0}}
−
** [http://www.uniprot.org/uniprot/P37760 P37760]
+
−
** [http://www.uniprot.org/uniprot/Q46769 Q46769]
+
−
** [http://www.uniprot.org/uniprot/O33664 O33664]
+
−
** [http://www.uniprot.org/uniprot/O66251 O66251]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=methionine_adenosyltransferase_regulatory_beta_subunit-related}}
+
−
{{#set: ec number=EC-1.1.1.133}}
+
−
{{#set: gene associated=Tiso_gene_4472}}
+
−
{{#set: in pathway=DTDPRHAMSYN-PWY}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:40, 21 March 2018

Pathway PWY-2221

  • taxonomic range:
  • common name:
    • Entner-Doudoroff pathway III (semi-phosphorylative)
  • Synonym(s):

Reaction(s) found

5 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-2221&oldid=43156"