Difference between revisions of "PWY-2221"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9528 RXN-9528] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-decanoyl-[acyl-carrier...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183963 TAX-...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9528 RXN-9528] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183963 TAX-183963]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183924 TAX-183924]
 
* common name:
 
* common name:
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** 3-oxo-decanoyl-[acyl-carrier protein] reductase
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** Entner-Doudoroff pathway III (semi-phosphorylative)
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** polyketide_synthase
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** 3-oxoacyl-(acyl-carrier-protein)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''9''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 H+[c] '''+''' 1 a 3-oxo-decanoyl-[acp][c] '''+''' 1 NADPH[c] '''=>''' 1 a (3R)-3-hydroxydecanoyl-[acp][c] '''+''' 1 NADP+[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_624]]
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** 7 reconstruction source(s) associated:
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** [[pantograph]]-[[synechocystis]]
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_500]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-athaliana]]
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* [[Tiso_gene_10876]]
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*** [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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*** [[manual-primary_network]]
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***EC-NUMBER
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*** [[orthology-creinhardtii]]
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* [[Tiso_gene_10415]]
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* [[3PGAREARR-RXN]]
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** [[pantograph]]-[[synechocystis]]
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** 16 associated gene(s):
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* [[Tiso_gene_135]]
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*** [[Tiso_gene_15048]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_7201]]
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***EC-NUMBER
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*** [[Tiso_gene_9922]]
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* [[Tiso_gene_9885]]
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*** [[Tiso_gene_2841]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_14530]]
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***EC-NUMBER
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*** [[Tiso_gene_16754]]
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* [[Tiso_gene_136]]
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*** [[Tiso_gene_2365]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_16271]]
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***EC-NUMBER
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*** [[Tiso_gene_5468]]
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* [[Tiso_gene_13083]]
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*** [[Tiso_gene_20311]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_14664]]
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***EC-NUMBER
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*** [[Tiso_gene_15391]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_14212]]
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***EC-NUMBER
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*** [[Tiso_gene_10516]]
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** [[pantograph]]-[[synechocystis]]
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*** [[Tiso_gene_9923]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_2667]]
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* [[Tiso_gene_16579]]
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** 7 reconstruction source(s) associated:
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** [[pantograph]]-[[synechocystis]]
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_13394]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-athaliana]]
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== Pathways  ==
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*** [[orthology-synechocystis]]
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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*** [[manual-primary_network]]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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* [[GLUCONOLACT-RXN]]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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** 3 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_1947]]
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* [[orthology]]:
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*** [[Tiso_gene_15098]]
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** [[pantograph]]:
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*** [[Tiso_gene_1948]]
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*** [[synechocystis]]
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** 1 reconstruction source(s) associated:
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*** [[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* [[manual]]:
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* [[KDPGALDOL-RXN]]
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** [[primary_network]]
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** 1 associated gene(s):
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* [[annotation]]:
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*** [[Tiso_gene_12620]]
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** [[pathwaytools]]:
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** 1 reconstruction source(s) associated:
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*** [[experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[in-silico_annotation]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=DEOXYGLUCONOKIN-RXN DEOXYGLUCONOKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUCONATE-DEHYDRATASE-RXN GLUCONATE-DEHYDRATASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE-1-DEHYDROGENASE-NADP+-RXN GLUCOSE-1-DEHYDROGENASE-NADP+-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-3443 RXN-3443]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-183963}}
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{{#set: common name=3-oxo-decanoyl-[acyl-carrier protein] reductase}}
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{{#set: taxonomic range=TAX-183924}}
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{{#set: common name=polyketide_synthase}}
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{{#set: common name=Entner-Doudoroff pathway III (semi-phosphorylative)}}
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{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
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{{#set: reaction found=5}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: total reaction=9}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: completion rate=56.0}}
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{{#set: ec number=EC-1.1.1.100}}
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−
{{#set: gene associated=Tiso_gene_624|Tiso_gene_500|Tiso_gene_10876|Tiso_gene_10415|Tiso_gene_135|Tiso_gene_9885|Tiso_gene_136|Tiso_gene_13083|Tiso_gene_16579|Tiso_gene_13394}}
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−
{{#set: in pathway=PWY-5971|PWY-5994}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:40, 21 March 2018

Pathway PWY-2221

  • taxonomic range:
  • common name:
    • Entner-Doudoroff pathway III (semi-phosphorylative)
  • Synonym(s):

Reaction(s) found

5 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-2221&oldid=43156"