Difference between revisions of "PWY-2941"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] == * direction: ** LEFT-TO-RIGHT * common name: ** 9-cis-epoxycarotenoid_dioxy...")
 
(Created page with "Category:Gene == Gene Tiso_gene_12618 == * left end position: ** 2352 * transcription direction: ** NEGATIVE * right end position: ** 6797 * centisome position: ** 34.4564...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] ==
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== Gene Tiso_gene_12618 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2352
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* common name:
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* transcription direction:
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** 9-cis-epoxycarotenoid_dioxygenase
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** NEGATIVE
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** 9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein
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* right end position:
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** beta-carotene
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** 6797
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.13.11.63 EC-1.13.11.63]
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** 34.45649   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[3.6.3.50-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD1F-129]][c] '''=>''' 2 [[RETINAL]][c]
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** [[pantograph]]-[[esiliculosus]]
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* With common name(s):
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* [[ADENOSINETRIPHOSPHATASE-RXN]]
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** 1 oxygen[c] '''+''' 1 all-trans-β-carotene[c] '''=>''' 2 all-trans-retinal[c]
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** [[pantograph]]-[[esiliculosus]]
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* [[ATPASE-RXN]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[ATPSYN-RXN]]
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* [[Tiso_gene_4653]]
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** in-silico_annotation
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** IN-SILICO_ANNOTATION
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***automated-name-match
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***EC-NUMBER
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== Pathways associated ==
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* [[Tiso_gene_13078]]
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* [[PWY-7219]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13079]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7740]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2352}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32888 32888]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=6797}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00032 R00032]
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{{#set: centisome position=34.45649    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=3.6.3.50-RXN|ADENOSINETRIPHOSPHATASE-RXN|ATPASE-RXN|ATPSYN-RXN}}
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{{#set: common name=9-cis-epoxycarotenoid_dioxygenase}}
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{{#set: pathway associated=PWY-7219}}
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{{#set: common name=9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein}}
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{{#set: common name=beta-carotene}}
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{{#set: ec number=EC-1.13.11.63}}
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{{#set: gene associated=Tiso_gene_4653|Tiso_gene_13078|Tiso_gene_13079|Tiso_gene_7740}}
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{{#set: in pathway=PWY-6857}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 16:38, 10 January 2018

Gene Tiso_gene_12618

  • left end position:
    • 2352
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 6797
  • centisome position:
    • 34.45649
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-2941&oldid=9862"