Difference between revisions of "PWY-2942"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIDOTRANS-RXN GLUTAMIDOTRANS-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIDOTRANS-RXN GLUTAMIDOTRANS-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/4.3.2.M2 EC-4.3.2.M2]
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** L-lysine biosynthesis III
 
* Synonym(s):
 
* Synonym(s):
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** imidazole glycerol phosphate synthase cyclase subunit
 
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** Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
 
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** Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
 
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''7''' reactions in the full pathway
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** 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c] '''+''' 1 [[GLN]][c] '''=>''' 1 [[AICAR]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[D-ERYTHRO-IMIDAZOLE-GLYCEROL-P]][c] '''+''' 1 [[PROTON]][c]
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* [[ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 phosphoribulosylformimino-AICAR-phosphate[c] '''+''' 1 L-glutamine[c] '''=>''' 1 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide[c] '''+''' 1 L-glutamate[c] '''+''' 1 D-erythro-imidazole-glycerol-phosphate[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_18603]]
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** 7 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_1565]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** [[orthology-athaliana]]
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* [[Tiso_gene_11199]]
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[synechocystis]]
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*** [[manual-primary_network]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[ASPARTATEKIN-RXN]]
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== Pathways  ==
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** 4 associated gene(s):
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* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
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*** [[Tiso_gene_4345]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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*** [[Tiso_gene_17057]]
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== Reconstruction information  ==
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*** [[Tiso_gene_13809]]
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* [[orthology]]:
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*** [[Tiso_gene_16097]]
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** [[pantograph]]:
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** 7 reconstruction source(s) associated:
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*** [[creinhardtii]]
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*** [[annotation-experimental_annotation]]
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*** [[synechocystis]]
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*** [[orthology-esiliculosus]]
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*** [[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* [[manual]]:
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*** [[orthology-athaliana]]
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** [[primary_network]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[DIAMINOPIMDECARB-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_10737]]
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*** [[Tiso_gene_12041]]
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** 6 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[DIHYDRODIPICSYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14829]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-14014]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13314]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN-4821]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMELATE-DEHYDROGENASE-RXN DIAMINOPIMELATE-DEHYDROGENASE-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24793 24793]
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{{#set: common name=L-lysine biosynthesis III}}
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* LIGAND-RXN:
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{{#set: reaction found=6}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04558 R04558]
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{{#set: total reaction=7}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=86.0}}
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{{#set: ec number=EC-4.3.2.M2}}
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{{#set: common name=imidazole glycerol phosphate synthase cyclase subunit|Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)|Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)}}
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{{#set: gene associated=Tiso_gene_1565|Tiso_gene_11199}}
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{{#set: in pathway=HISTSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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Latest revision as of 20:35, 21 March 2018

Pathway PWY-2942

  • taxonomic range:
  • common name:
    • L-lysine biosynthesis III
  • Synonym(s):

Reaction(s) found

6 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-2942&oldid=42624"