Difference between revisions of "PWY-3221"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAICARSYN-RXN SAICARSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribosylamino...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3221 PWY-3221] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-33...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAICARSYN-RXN SAICARSYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3221 PWY-3221] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
 
* common name:
 
* common name:
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** phosphoribosylaminoimidazole-succinocarboxamide_synthase
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** dTDP-L-rhamnose biosynthesis II
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* ec number:
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** [http://enzyme.expasy.org/EC/6.3.2.6 EC-6.3.2.6]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''3''' reactions in the full pathway
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** 1 [[PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
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* [[DTDPGLUCDEHYDRAT-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate[c] '''+''' 1 L-aspartate[c] '''+''' 1 ATP[c] '''=>''' 1 phosphate[c] '''+''' 1 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_7329]]
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*** [[Tiso_gene_12394]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* [[Tiso_gene_20436]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-synechocystis]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[DTDPGLUCOSEPP-RXN]]
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== Pathways  ==
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** 1 associated gene(s):
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* [[PWY-6123]], inosine-5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6123 PWY-6123]
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*** [[Tiso_gene_14704]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[PWY-6124]], inosine-5'-phosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6124 PWY-6124]
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*** [[orthology-synechocystis]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reaction(s) not found ==
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* [[PWY-7234]], inosine-5'-phosphate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7234 PWY-7234]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-5461 RXN-5461]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22628 22628]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-3221 PWY-3221]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-3398}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04591 R04591]
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{{#set: common name=dTDP-L-rhamnose biosynthesis II}}
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* UNIPROT:
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/Q07296 Q07296]
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{{#set: total reaction=3}}
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** [http://www.uniprot.org/uniprot/Q9PHZ9 Q9PHZ9]
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{{#set: completion rate=67.0}}
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** [http://www.uniprot.org/uniprot/P0A7D7 P0A7D7]
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** [http://www.uniprot.org/uniprot/P12046 P12046]
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** [http://www.uniprot.org/uniprot/Q58987 Q58987]
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** [http://www.uniprot.org/uniprot/Q9JV73 Q9JV73]
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** [http://www.uniprot.org/uniprot/P50124 P50124]
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** [http://www.uniprot.org/uniprot/P27602 P27602]
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** [http://www.uniprot.org/uniprot/P27616 P27616]
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** [http://www.uniprot.org/uniprot/P22234 P22234]
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** [http://www.uniprot.org/uniprot/P73471 P73471]
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** [http://www.uniprot.org/uniprot/Q9R7D5 Q9R7D5]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoribosylaminoimidazole-succinocarboxamide_synthase}}
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{{#set: ec number=EC-6.3.2.6}}
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{{#set: gene associated=Tiso_gene_20436}}
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{{#set: in pathway=PWY-6123|PWY-6124|PWY-7234}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:46, 21 March 2018

Pathway PWY-3221

  • taxonomic range:
  • common name:
    • dTDP-L-rhamnose biosynthesis II
  • Synonym(s):

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-3221&oldid=43682"