Difference between revisions of "PWY-361"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** acyl...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-580...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13614 RXN-13614] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
 
* common name:
 
* common name:
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** polyketide_synthase
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** phenylpropanoid biosynthesis
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** acyl-_synthetase
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** ORF
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** long_chain_acyl-_synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
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** monolignol biosynthesis
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** lignin biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''15''' reactions in the full pathway
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** 1 [[CPD-3617]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[CPD-10267]][c]
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 decanoate[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 decanoyl-CoA[c]
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*** [[Tiso_gene_12275]]
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*** [[Tiso_gene_14183]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* [[Tiso_gene_7855]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* [[CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN]]
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***EC-NUMBER
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** 2 associated gene(s):
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* [[Tiso_gene_136]]
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*** [[Tiso_gene_10561]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_14561]]
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***EC-NUMBER
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_135]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[RXN-1101]]
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* [[Tiso_gene_9394]]
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** 3 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_15272]]
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***EC-NUMBER
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*** [[Tiso_gene_9504]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_11016]]
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***EC-NUMBER
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** 2 reconstruction source(s) associated:
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-athaliana]]
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* [[Tiso_gene_13394]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* [[RXN-1102]]
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***EC-NUMBER
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** 2 associated gene(s):
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* [[Tiso_gene_10876]]
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*** [[Tiso_gene_15088]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_16681]]
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***EC-NUMBER
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_500]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[RXN-1106]]
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* [[Tiso_gene_348]]
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** 3 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_11016]]
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***EC-NUMBER
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*** [[Tiso_gene_15272]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_9504]]
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***EC-NUMBER
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_4191]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[RXN-1125]]
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** EXPERIMENTAL_ANNOTATION
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** 2 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_15088]]
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== Pathways  ==
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*** [[Tiso_gene_16681]]
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* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
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** 2 reconstruction source(s) associated:
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** '''5''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-athaliana]]
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== Reconstruction information  ==
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*** [[orthology-esiliculosus]]
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* [[orthology]]:
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* [[RXN-1143]]
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** [[pantograph]]:
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** 2 associated gene(s):
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*** [[esiliculosus]]
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*** [[Tiso_gene_18257]]
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* [[annotation]]:
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*** [[Tiso_gene_18971]]
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** [[pathwaytools]]:
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** 2 reconstruction source(s) associated:
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*** [[experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.36-RXN 1.14.13.36-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.133-RXN 2.3.1.133-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1142 RXN-1142]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2581 RXN-2581]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2601 RXN-2601]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2602 RXN-2602]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2621 RXN-2621]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2622 RXN-2622]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ARACYC:
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{{#set: common name=polyketide_synthase}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-361 PWY-361]
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{{#set: common name=acyl-_synthetase}}
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{{#set: taxonomic range=TAX-58024}}
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{{#set: common name=ORF}}
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{{#set: common name=phenylpropanoid biosynthesis}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: common name=monolignol biosynthesis|lignin biosynthesis}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: reaction found=7}}
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{{#set: gene associated=Tiso_gene_7855|Tiso_gene_136|Tiso_gene_135|Tiso_gene_9394|Tiso_gene_13394|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_348|Tiso_gene_4191}}
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{{#set: total reaction=15}}
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{{#set: in pathway=PWY-7094}}
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{{#set: completion rate=47.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:13, 21 March 2018

Pathway PWY-361

  • taxonomic range:
  • common name:
    • phenylpropanoid biosynthesis
  • Synonym(s):
    • monolignol biosynthesis
    • lignin biosynthesis

Reaction(s) found

7 reactions found over 15 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-361&oldid=40283"