Difference between revisions of "PWY-361"

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(Created page with "Category:Gene == Gene Tiso_gene_19622 == * left end position: ** 203 * transcription direction: ** POSITIVE * right end position: ** 2037 * centisome position: ** 9.385114...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-580...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Pathway]]
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== Gene Tiso_gene_19622 ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] ==
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* left end position:
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* taxonomic range:
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** 203
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
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* transcription direction:
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* common name:
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** POSITIVE
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** phenylpropanoid biosynthesis
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* right end position:
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** 2037
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* centisome position:
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** 9.385114   
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* Synonym(s):
 
* Synonym(s):
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** monolignol biosynthesis
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** lignin biosynthesis
  
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== Reactions associated ==
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== Reaction(s) found ==
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* [[RXN-11839]]
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'''7''' reactions found over '''15''' reactions in the full pathway
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** in-silico_annotation
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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***automated-name-match
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** 2 associated gene(s):
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* [[RXN-11840]]
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*** [[Tiso_gene_12275]]
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** in-silico_annotation
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*** [[Tiso_gene_14183]]
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***automated-name-match
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** 2 reconstruction source(s) associated:
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* [[RXN-11841]]
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*** [[orthology-athaliana]]
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** in-silico_annotation
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*** [[orthology-esiliculosus]]
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***automated-name-match
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* [[CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN]]
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* [[RXN-11842]]
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** 2 associated gene(s):
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** in-silico_annotation
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*** [[Tiso_gene_10561]]
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***automated-name-match
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*** [[Tiso_gene_14561]]
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* [[TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN]]
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** 2 reconstruction source(s) associated:
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** in-silico_annotation
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*** [[orthology-athaliana]]
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***automated-name-match
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*** [[orthology-esiliculosus]]
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** experimental_annotation
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* [[RXN-1101]]
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***automated-name-match
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** 3 associated gene(s):
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_15272]]
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== Pathways associated ==
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*** [[Tiso_gene_9504]]
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*** [[Tiso_gene_11016]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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* [[RXN-1102]]
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** 2 associated gene(s):
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*** [[Tiso_gene_15088]]
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*** [[Tiso_gene_16681]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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* [[RXN-1106]]
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** 3 associated gene(s):
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*** [[Tiso_gene_11016]]
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*** [[Tiso_gene_15272]]
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*** [[Tiso_gene_9504]]
 +
** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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* [[RXN-1125]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_15088]]
 +
*** [[Tiso_gene_16681]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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* [[RXN-1143]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18257]]
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*** [[Tiso_gene_18971]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.36-RXN 1.14.13.36-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.133-RXN 2.3.1.133-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1142 RXN-1142]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2581 RXN-2581]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2601 RXN-2601]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2602 RXN-2602]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2621 RXN-2621]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2622 RXN-2622]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=203}}
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* ARACYC:
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{{#set: transcription direction=POSITIVE}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-361 PWY-361]
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{{#set: right end position=2037}}
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{{#set: taxonomic range=TAX-58024}}
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{{#set: centisome position=9.385114    }}
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{{#set: common name=phenylpropanoid biosynthesis}}
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{{#set: reaction associated=RXN-11839|RXN-11840|RXN-11841|RXN-11842|TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN}}
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{{#set: common name=monolignol biosynthesis|lignin biosynthesis}}
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{{#set: reaction found=7}}
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{{#set: total reaction=15}}
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{{#set: completion rate=47.0}}

Latest revision as of 20:13, 21 March 2018

Pathway PWY-361

  • taxonomic range:
  • common name:
    • phenylpropanoid biosynthesis
  • Synonym(s):
    • monolignol biosynthesis
    • lignin biosynthesis

Reaction(s) found

7 reactions found over 15 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-361&oldid=40283"