Difference between revisions of "PWY-4861"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17873 RXN-17873] == * direction: ** LEFT-TO-RIGHT * common name: ** methionine_aminopeptidase *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17873 RXN-17873] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** methionine_aminopeptidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.1 EC-2.5.1.1]
+
** [http://enzyme.expasy.org/EC/3.4.11.18 EC-3.4.11.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-4211]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[GERANYL-PP]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[L-methionyl-L-alanyl-Protein]][c] '''=>''' 1 [[N-terminal-L-alanine]][c] '''+''' 1 [[MET]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 dimethylallyl diphosphate[c] '''+''' 1 isopentenyl diphosphate[c] '''<=>''' 1 geranyl diphosphate[c] '''+''' 1 diphosphate[c]
+
** 1 H2O[c] '''+''' 1 an N-terminal-L-methionyl-L-alanyl-[protein][c] '''=>''' 1 an N-terminal L-alanyl-[protein][c] '''+''' 1 L-methionine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11582]]
+
* [[Tiso_gene_4247]]
−
** [[pantograph]]-[[esiliculosus]]
+
** IN-SILICO_ANNOTATION
−
* [[Tiso_gene_2848]]
+
***AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[creinhardtii]]
+
* [[Tiso_gene_5715]]
−
* [[Tiso_gene_13582]]
+
** IN-SILICO_ANNOTATION
−
** [[pantograph]]-[[esiliculosus]]
+
***AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_1035]]
+
** EXPERIMENTAL_ANNOTATION
−
** [[pantograph]]-[[esiliculosus]]
+
***AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_18201]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_19542]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10317]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_16284]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_4719]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
+
* [[PWY-7800]], Ac/N-end rule pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7800 PWY-7800]
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659]
+
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
−
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
*** [[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
+
{{#set: common name=methionine_aminopeptidase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-3.4.11.18}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
+
{{#set: gene associated=Tiso_gene_4247|Tiso_gene_5715}}
−
* UNIPROT:
+
{{#set: in pathway=PWY-7800}}
−
** [http://www.uniprot.org/uniprot/P08524 P08524]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P05369 P05369]
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/P14324 P14324]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P46376 P46376]
+
−
** [http://www.uniprot.org/uniprot/Q45220 Q45220]
+
−
** [http://www.uniprot.org/uniprot/P49350 P49350]
+
−
** [http://www.uniprot.org/uniprot/Q50891 Q50891]
+
−
** [http://www.uniprot.org/uniprot/P49349 P49349]
+
−
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
+
−
** [http://www.uniprot.org/uniprot/P49351 P49351]
+
−
** [http://www.uniprot.org/uniprot/P49352 P49352]
+
−
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
+
−
** [http://www.uniprot.org/uniprot/O24241 O24241]
+
−
** [http://www.uniprot.org/uniprot/O24242 O24242]
+
−
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
+
−
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
+
−
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
+
−
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
+
−
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
+
−
** [http://www.uniprot.org/uniprot/P49353 P49353]
+
−
** [http://www.uniprot.org/uniprot/O04882 O04882]
+
−
** [http://www.uniprot.org/uniprot/O65004 O65004]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-2.5.1.1}}
+
−
{{#set: gene associated=Tiso_gene_11582|Tiso_gene_2848|Tiso_gene_13582|Tiso_gene_1035|Tiso_gene_18201|Tiso_gene_19542|Tiso_gene_10317|Tiso_gene_16284|Tiso_gene_4719}}
+
−
{{#set: in pathway=PWY-7736|PWY-6859|PWY-7709|PWY-7102|PWY-7182|PWY-7659|PWY-5123|PWY-5122|PWY-6383|PWY-7141|PWY-7410}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+

Revision as of 19:04, 18 March 2018

Reaction RXN-17873

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • methionine_aminopeptidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

  • Tiso_gene_4247
    • IN-SILICO_ANNOTATION
      • AUTOMATED-NAME-MATCH
  • Tiso_gene_5715
    • IN-SILICO_ANNOTATION
      • AUTOMATED-NAME-MATCH
    • EXPERIMENTAL_ANNOTATION
      • AUTOMATED-NAME-MATCH

Pathways

  • PWY-7800, Ac/N-end rule pathway: PWY-7800
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-4861&oldid=21655"