Difference between revisions of "PWY-5057"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9634 RXN-9634] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9634 RXN-9634] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** formaldehyde assimilation I (serine pathway)
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** polyketide_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''5''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
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* [[2PGADEHYDRAT-RXN]]
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** 1 [[R-3-hydroxystearoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Octadec-2-enoyl-ACPs]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_14718]]
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** 1 a (3R)-3-hydroxystearoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-octadec-2-enoyl-[acp][c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_5619]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_13317]]
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Genes have been associated with this reaction based on different elements listed below.
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** 7 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_10876]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_500]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[manual-primary_network]]
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* Gene: [[Tiso_gene_136]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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* [[GLYOHMETRANS-RXN]]
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*** Assignment: EC-NUMBER
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** 4 associated gene(s):
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* Gene: [[Tiso_gene_135]]
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*** [[Tiso_gene_16153]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_16154]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_18652]]
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* Gene: [[Tiso_gene_13394]]
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*** [[Tiso_gene_7776]]
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** Source: [[annotation-in-silico_annotation]]
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** 4 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_6884]]
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*** [[manual-primary_network]]
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[MALATE-DEH-RXN]]
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* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
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** 2 associated gene(s):
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** '''5''' reactions found over '''6''' reactions in the full pathway
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*** [[Tiso_gene_1990]]
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* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
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*** [[Tiso_gene_2323]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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** 7 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-experimental_annotation]]
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* Category: [[manual]]
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*** [[orthology-esiliculosus]]
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** Source: [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* Category: [[annotation]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Tool: [[pathwaytools]]
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*** [[manual-primary_network]]
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-creinhardtii]]
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*** Tool: [[pathwaytools]]
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* [[RXN-15513]]
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** 8 associated gene(s):
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*** [[Tiso_gene_7201]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_14664]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN-2881]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=GKI-RXN GKI-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYPYRUVATE-REDUCTASE-RXN HYDROXYPYRUVATE-REDUCTASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALATE--COA-LIGASE-RXN MALATE--COA-LIGASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALYL-COA-LYASE-RXN MALYL-COA-LYASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2802 RXN-2802]
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* [http://metacyc.org/META/NEW-IMAGE?object=SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=formaldehyde assimilation I (serine pathway)}}
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{{#set: common name=polyketide_synthase}}
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{{#set: reaction found=5}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: total reaction=13}}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: completion rate=38.0}}
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{{#set: gene associated=Tiso_gene_10876|Tiso_gene_500|Tiso_gene_136|Tiso_gene_135|Tiso_gene_13394|Tiso_gene_6884}}
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{{#set: in pathway=PWY-5989|PWY3O-355}}
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{{#set: reconstruction category=manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 15:57, 21 March 2018

Reaction RXN-9634

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 5 reactions found over 6 reactions in the full pathway
  • PWY3O-355, stearate biosynthesis III (fungi): PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5057&oldid=31487"