Difference between revisions of "PWY-5057"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9634 RXN-9634] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5057 PWY-5057] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9634 RXN-9634] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5057 PWY-5057] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
* common name:
 
* common name:
** polyketide_synthase
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** L-valine degradation II
* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
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* Synonym(s):
 
* Synonym(s):
 +
** Ehrlich pathway
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''2''' reactions found over '''3''' reactions in the full pathway
** 1 [[R-3-hydroxystearoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Octadec-2-enoyl-ACPs]][c]
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* [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
* With common name(s):
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** 2 associated gene(s):
** 1 a (3R)-3-hydroxystearoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-octadec-2-enoyl-[acp][c]
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*** [[Tiso_gene_18403]]
 
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*** [[Tiso_gene_14984]]
== Genes associated with this reaction  ==
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** 5 reconstruction source(s) associated:
Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
* Gene: [[Tiso_gene_10876]]
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*** [[manual-primary_network]]
** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
*** Assignment: EC-NUMBER
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*** [[orthology-synechocystis]]
* Gene: [[Tiso_gene_500]]
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*** [[orthology-esiliculosus]]
** Source: [[annotation-in-silico_annotation]]
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* [[RXN-7657]]
*** Assignment: EC-NUMBER
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** 5 associated gene(s):
* Gene: [[Tiso_gene_136]]
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*** [[Tiso_gene_6562]]
** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_5425]]
*** Assignment: EC-NUMBER
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*** [[Tiso_gene_7649]]
* Gene: [[Tiso_gene_135]]
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*** [[Tiso_gene_6563]]
** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_5424]]
*** Assignment: EC-NUMBER
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** 1 reconstruction source(s) associated:
* Gene: [[Tiso_gene_13394]]
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*** [[annotation-in-silico_annotation]]
** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7643 RXN-7643]
* Gene: [[Tiso_gene_6884]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
{{#set: common name=polyketide_synthase}}
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{{#set: taxonomic range=TAX-4751}}
{{#set: ec number=EC-2.3.1.86}}
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{{#set: common name=L-valine degradation II}}
{{#set: ec number=EC-4.2.1.59}}
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{{#set: common name=Ehrlich pathway}}
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_500|Tiso_gene_136|Tiso_gene_135|Tiso_gene_13394|Tiso_gene_6884}}
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{{#set: reaction found=2}}
{{#set: in pathway=PWY-5989|PWY3O-355}}
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{{#set: total reaction=3}}
{{#set: reconstruction category=manual|annotation}}
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{{#set: completion rate=67.0}}
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:20, 21 March 2018

Pathway PWY-5057

  • taxonomic range:
  • common name:
    • L-valine degradation II
  • Synonym(s):
    • Ehrlich pathway

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links