Difference between revisions of "PWY-5060"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5060 PWY-5060] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-33...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5060 PWY-5060] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
 
* common name:
 
* common name:
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** drap_deaminase
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** luteolin biosynthesis
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** pseudouridine_synthase_family_protein
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−
** ORF
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** pseudouridine_synthase
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** Transmembrane_protein
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** trna-pseudouridine_synthasei
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** ribosomal_large_subunit_pseudouridine_synthase_d
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** trna_pseudouridinesynthase
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** trna_pseudouridine_synthase
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** pseudouridylate_synthase
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** pseudouridine_synthase_rlu_family_protein
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** protein_pus7
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** trna_pseudouridine_synthase_a
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** pseudouridine
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** rna_pseudouridylate_synthase_domain-containing_protein_1
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** pseudouridine_synthase_1-like_protein
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** trna_pseudouridine_synthase_d
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* ec number:
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** [http://enzyme.expasy.org/EC/5.4.99.12 EC-5.4.99.12]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''6''' reactions in the full pathway
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** 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
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* [[RXN-7651]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 a uridine38-40 in tRNA[c] '''=>''' 1 a pseudouridine38-40 in tRNA[c]
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*** [[Tiso_gene_1547]]
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*** [[Tiso_gene_8263]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_3154]]
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== Reaction(s) not found ==
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7650 RXN-7650]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7652 RXN-7652]
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* Gene: [[Tiso_gene_17798]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7653 RXN-7653]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7686 RXN-7686]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7687 RXN-7687]
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* Gene: [[Tiso_gene_15274]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_5651]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_1134]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18936]]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4020]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2851]]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
* Gene: [[Tiso_gene_7584]]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_11913]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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−
** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_582]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_9833]]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17799]]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18988]]
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−
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_16656]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18959]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_178]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_11842]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10567]]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
* Gene: [[Tiso_gene_12093]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
* Gene: [[Tiso_gene_18184]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
* Gene: [[Tiso_gene_1548]]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
* Gene: [[Tiso_gene_17745]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_4703]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2850]]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
* Gene: [[Tiso_gene_2988]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_19667]]
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−
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13557]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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−
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_18028]]
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−
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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−
* Gene: [[Tiso_gene_18987]]
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** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_16727]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_5234]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_19622]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: AUTOMATED-NAME-MATCH
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: AUTOMATED-NAME-MATCH
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_3970]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
* Gene: [[Tiso_gene_3166]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
* Gene: [[Tiso_gene_12635]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[orthology-esiliculosus]]
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−
* Gene: [[Tiso_gene_7417]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4021]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
== Pathways  ==
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−
== Reconstruction information  ==
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* Category: [[orthology]]
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−
** Source: [[orthology-esiliculosus]]
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−
*** Tool: [[pantograph]]
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−
* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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−
*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* ARACYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R03020 R03020]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5060 PWY-5060]
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* UNIPROT:
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{{#set: taxonomic range=TAX-3398}}
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** [http://www.uniprot.org/uniprot/Q59069 Q59069]
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{{#set: common name=luteolin biosynthesis}}
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** [http://www.uniprot.org/uniprot/P47428 P47428]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P45291 P45291]
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/Q45557 Q45557]
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{{#set: completion rate=17.0}}
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** [http://www.uniprot.org/uniprot/Q50291 Q50291]
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−
** [http://www.uniprot.org/uniprot/P53167 P53167]
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−
** [http://www.uniprot.org/uniprot/Q12211 Q12211]
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−
** [http://www.uniprot.org/uniprot/P73295 P73295]
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−
** [http://www.uniprot.org/uniprot/P07649 P07649]
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−
{{#set: direction=LEFT-TO-RIGHT}}
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−
{{#set: common name=drap_deaminase}}
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−
{{#set: common name=pseudouridine_synthase_family_protein}}
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−
{{#set: common name=ORF}}
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−
{{#set: common name=pseudouridine_synthase}}
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−
{{#set: common name=Transmembrane_protein}}
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−
{{#set: common name=trna-pseudouridine_synthasei}}
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−
{{#set: common name=ribosomal_large_subunit_pseudouridine_synthase_d}}
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−
{{#set: common name=trna_pseudouridinesynthase}}
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−
{{#set: common name=trna_pseudouridine_synthase}}
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−
{{#set: common name=pseudouridylate_synthase}}
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−
{{#set: common name=pseudouridine_synthase_rlu_family_protein}}
+
−
{{#set: common name=protein_pus7}}
+
−
{{#set: common name=trna_pseudouridine_synthase_a}}
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−
{{#set: common name=pseudouridine}}
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−
{{#set: common name=rna_pseudouridylate_synthase_domain-containing_protein_1}}
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−
{{#set: common name=pseudouridine_synthase_1-like_protein}}
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−
{{#set: common name=trna_pseudouridine_synthase_d}}
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−
{{#set: ec number=EC-5.4.99.12}}
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−
{{#set: gene associated=Tiso_gene_3154|Tiso_gene_17798|Tiso_gene_15274|Tiso_gene_5651|Tiso_gene_1134|Tiso_gene_18936|Tiso_gene_4020|Tiso_gene_2851|Tiso_gene_7584|Tiso_gene_11913|Tiso_gene_582|Tiso_gene_9833|Tiso_gene_17799|Tiso_gene_18988|Tiso_gene_16656|Tiso_gene_18959|Tiso_gene_178|Tiso_gene_11842|Tiso_gene_10567|Tiso_gene_12093|Tiso_gene_18184|Tiso_gene_1548|Tiso_gene_17745|Tiso_gene_4703|Tiso_gene_2850|Tiso_gene_2988|Tiso_gene_19667|Tiso_gene_13557|Tiso_gene_18028|Tiso_gene_18987|Tiso_gene_16727|Tiso_gene_5234|Tiso_gene_19622|Tiso_gene_3970|Tiso_gene_3166|Tiso_gene_12635|Tiso_gene_7417|Tiso_gene_4021}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:37, 21 March 2018

Pathway PWY-5060

  • taxonomic range:
  • common name:
    • luteolin biosynthesis
  • Synonym(s):

Reaction(s) found

1 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5060&oldid=42763"