Difference between revisions of "PWY-5083"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1803 RXN3O-1803] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-synthase ** pol...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1803 RXN3O-1803] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** 3-oxoacyl-synthase
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** NAD/NADH phosphorylation and dephosphorylation
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** polyketide_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''6''' reactions in the full pathway
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** 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Palmitoyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-stearoyl-ACPs]][c]
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* [[NAD-KIN-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 a palmitoyl-[acp][c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 CO2[c] '''+''' 1 a 3-oxo-stearoyl-[acp][c]
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*** [[Tiso_gene_1163]]
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*** [[Tiso_gene_14560]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_1420]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_135]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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* [[NADH-DEHYDROG-A-RXN]]
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*** Assignment: EC-NUMBER
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** 18 associated gene(s):
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* Gene: [[Tiso_gene_5939]]
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*** [[Tiso_gene_13075]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_4836]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_5171]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_359]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_15276]]
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* Gene: [[Tiso_gene_13394]]
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*** [[Tiso_gene_10326]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_18831]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_4894]]
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* Gene: [[Tiso_gene_14485]]
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*** [[Tiso_gene_9874]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_18172]]
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** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_18339]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_19691]]
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* Gene: [[Tiso_gene_19302]]
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*** [[Tiso_gene_2949]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_17199]]
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** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_18707]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_3113]]
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* Gene: [[Tiso_gene_500]]
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*** [[Tiso_gene_355]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_358]]
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*** Assignment: EC-NUMBER
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** 4 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_10876]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_136]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-5822]]
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*** Assignment: EC-NUMBER
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** 8 associated gene(s):
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* Gene: [[Tiso_gene_15991]]
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*** [[Tiso_gene_9372]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_17309]]
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== Pathways  ==
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*** [[Tiso_gene_15256]]
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* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
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*** [[Tiso_gene_3271]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[Tiso_gene_8159]]
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== Reconstruction information  ==
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*** [[Tiso_gene_10738]]
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* Category: [[orthology]]
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*** [[Tiso_gene_5996]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_17310]]
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*** Tool: [[pantograph]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-synechocystis]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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== Reaction(s) not found ==
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=NADH-KINASE-RXN NADH-KINASE-RXN]
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRNUTRANSHYDROGEN-RXN PYRNUTRANSHYDROGEN-RXN]
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* Category: [[manual]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7703 RXN-7703]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ARACYC:
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{{#set: common name=3-oxoacyl-synthase}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5083 PWY-5083]
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{{#set: common name=polyketide_synthase}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: common name=NAD/NADH phosphorylation and dephosphorylation}}
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{{#set: gene associated=Tiso_gene_135|Tiso_gene_5939|Tiso_gene_13394|Tiso_gene_14485|Tiso_gene_19302|Tiso_gene_500|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_15991}}
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{{#set: reaction found=3}}
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{{#set: in pathway=PWY3O-355}}
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{{#set: total reaction=6}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: completion rate=50.0}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:37, 21 March 2018

Pathway PWY-5083

  • taxonomic range:
  • common name:
    • NAD/NADH phosphorylation and dephosphorylation
  • Synonym(s):

Reaction(s) found

3 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5083&oldid=42827"