Difference between revisions of "PWY-5104"

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(Created page with "Category:Gene == Gene Tiso_gene_14709 == * left end position: ** 3254 * transcription direction: ** NEGATIVE * right end position: ** 5413 * centisome position: ** 59.4229...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] == * direction: ** REVERSIBLE * common name: ** ghmp_n-terminal_doma...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_14709 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] ==
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* left end position:
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* direction:
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** 3254
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** REVERSIBLE
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* transcription direction:
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* common name:
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** NEGATIVE
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** ghmp_n-terminal_domain-containing_protein
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* right end position:
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** ORF
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** 5413
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** galactokinase-like_protein
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* centisome position:
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* ec number:
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** 59.422935   
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** [http://enzyme.expasy.org/EC/2.7.1.6 EC-2.7.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[OHMETHYLBILANESYN-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[ATP]][c] '''+''' 1 [[ALPHA-D-GALACTOSE]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GALACTOSE-1P]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 ATP[c] '''+''' 1 &alpha;-D-galactose[c] '''<=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 &alpha;-D-galactose 1-phosphate[c]
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***ec-number
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_11795]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways associated ==
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*** Assignment: EC-NUMBER
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* [[PWY-5189]]
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* Gene: [[Tiso_gene_12191]]
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* [[PWY-5188]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_5041]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10797]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5042]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3254}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13553 13553]
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{{#set: right end position=5413}}
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* LIGAND-RXN:
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{{#set: centisome position=59.422935    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01092 R01092]
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{{#set: reaction associated=OHMETHYLBILANESYN-RXN}}
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* UNIPROT:
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{{#set: pathway associated=PWY-5189|PWY-5188}}
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** [http://www.uniprot.org/uniprot/P09608 P09608]
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** [http://www.uniprot.org/uniprot/Q01415 Q01415]
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** [http://www.uniprot.org/uniprot/P22713 P22713]
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** [http://www.uniprot.org/uniprot/P31767 P31767]
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** [http://www.uniprot.org/uniprot/Q8X7P4 Q8X7P4]
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** [http://www.uniprot.org/uniprot/Q9R7D7 Q9R7D7]
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** [http://www.uniprot.org/uniprot/P96993 P96993]
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** [http://www.uniprot.org/uniprot/P04385 P04385]
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** [http://www.uniprot.org/uniprot/P0A6T3 P0A6T3]
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** [http://www.uniprot.org/uniprot/P13227 P13227]
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** [http://www.uniprot.org/uniprot/P39574 P39574]
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** [http://www.uniprot.org/uniprot/P13045 P13045]
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** [http://www.uniprot.org/uniprot/Q9SEE5 Q9SEE5]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ghmp_n-terminal_domain-containing_protein}}
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{{#set: common name=ORF}}
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{{#set: common name=galactokinase-like_protein}}
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{{#set: ec number=EC-2.7.1.6}}
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{{#set: gene associated=Tiso_gene_11795|Tiso_gene_12191|Tiso_gene_5041|Tiso_gene_10797|Tiso_gene_5042}}
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{{#set: in pathway=PWY-6317|PWY66-422|PWY-6527|PWY-3821}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:06, 21 March 2018

Reaction GALACTOKIN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ghmp_n-terminal_domain-containing_protein
    • ORF
    • galactokinase-like_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 α-D-galactose[c] <=> 1 ADP[c] + 1 H+[c] + 1 α-D-galactose 1-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6317, D-galactose degradation I (Leloir pathway): PWY-6317
    • 5 reactions found over 5 reactions in the full pathway
  • PWY66-422, D-galactose degradation V (Leloir pathway): PWY66-422
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6527, stachyose degradation: PWY-6527
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-3821, D-galactose degradation III: PWY-3821
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5104&oldid=32422"