Difference between revisions of "PWY-5109"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISPH2-RXN ISPH2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5109 PWY-5109] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISPH2-RXN ISPH2-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5109 PWY-5109] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 
* common name:
 
* common name:
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** ORF
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** 2-methylbutanoate biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/1.17.7.4 EC-1.17.7.4]
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* Synonym(s):
 
* Synonym(s):
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** 2-methylbutyrate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''6''' reactions in the full pathway
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** 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[WATER]][c]
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* [[METHYLACETOACETYLCOATHIOL-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] '''+''' 2 H+[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 isopentenyl diphosphate[c] '''+''' 1 H2O[c]
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*** [[Tiso_gene_16181]]
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*** [[Tiso_gene_17451]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_15327]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_5609]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[TIGLYLCOA-HYDROXY-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** 5 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_14257]]
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** [[pantograph]]-[[athaliana]]
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*** [[Tiso_gene_14262]]
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** [[pantograph]]-[[synechocystis]]
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*** [[Tiso_gene_6885]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_5857]]
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== Pathways  ==
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*** [[Tiso_gene_16145]]
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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** 2 reconstruction source(s) associated:
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** '''9''' reactions found over '''9''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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*** [[orthology-esiliculosus]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reaction(s) not found ==
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.178-RXN 1.1.1.178-RXN]
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* [[orthology]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=2-METHYLACYL-COA-DEHYDROGENASE-RXN 2-METHYLACYL-COA-DEHYDROGENASE-RXN]
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** [[pantograph]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=PROPIONATE-COA-TRANSFERASE-RXN PROPIONATE-COA-TRANSFERASE-RXN]
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*** [[synechocystis]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15031 RXN-15031]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33208}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08209 R08209]
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{{#set: common name=2-methylbutanoate biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05884 R05884]
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{{#set: common name=2-methylbutyrate biosynthesis}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=2}}
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{{#set: common name=ORF}}
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{{#set: total reaction=6}}
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{{#set: ec number=EC-1.17.7.4}}
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{{#set: completion rate=33.0}}
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{{#set: gene associated=Tiso_gene_5609}}
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{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:31, 21 March 2018

Pathway PWY-5109

  • taxonomic range:
  • common name:
    • 2-methylbutanoate biosynthesis
  • Synonym(s):
    • 2-methylbutyrate biosynthesis

Reaction(s) found

2 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5109&oldid=42186"