Difference between revisions of "PWY-5177"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYMETVALDEHYDRAT-RXN DIHYDROXYMETVALDEHYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYMETVALDEHYDRAT-RXN DIHYDROXYMETVALDEHYDRAT-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** 2,3-Dihydroxy-3-methylvalerate dehydratase
+
** glutaryl-CoA degradation
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/4.2.1.9 EC-4.2.1.9]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''3''' reactions found over '''5''' reactions in the full pathway
−
** 1 [[1-KETO-2-METHYLVALERATE]][c] '''=>''' 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[WATER]][c]
+
* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
−
* With common name(s):
+
** 3 associated gene(s):
−
** 1 (R)-2,3-dihydroxy-3-methylpentanoate[c] '''=>''' 1 (S)-3-methyl-2-oxopentanoate[c] '''+''' 1 H2O[c]
+
*** [[Tiso_gene_16181]]
−
 
+
*** [[Tiso_gene_15327]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_17451]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** 4 reconstruction source(s) associated:
−
* [[Tiso_gene_1563]]
+
*** [[orthology-athaliana]]
−
** [[pantograph]]-[[athaliana]]
+
*** [[orthology-creinhardtii]]
−
** [[pantograph]]-[[synechocystis]]
+
*** [[orthology-synechocystis]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[orthology-esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
+
* [[RXN-11662]]
−
== Pathways  ==
+
** 7 associated gene(s):
−
* [[PWY-5103]], L-isoleucine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5103 PWY-5103]
+
*** [[Tiso_gene_16703]]
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
*** [[Tiso_gene_14027]]
−
* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
+
*** [[Tiso_gene_14262]]
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
*** [[Tiso_gene_14026]]
−
* [[PWY-5101]], L-isoleucine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5101 PWY-5101]
+
*** [[Tiso_gene_18838]]
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
*** [[Tiso_gene_18839]]
−
* [[PWY-5104]], L-isoleucine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104]
+
*** [[Tiso_gene_5857]]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** 5 reconstruction source(s) associated:
−
== Reconstruction information  ==
+
*** [[annotation-experimental_annotation]]
−
* [[orthology]]:
+
*** [[orthology-athaliana]]
−
** [[pantograph]]:
+
*** [[annotation-in-silico_annotation]]
−
*** [[creinhardtii]]
+
*** [[orthology-creinhardtii]]
−
*** [[synechocystis]]
+
*** [[orthology-esiliculosus]]
−
*** [[athaliana]]
+
* [[RXN-11667]]
−
*** [[esiliculosus]]
+
** 1 associated gene(s):
−
* [[manual]]:
+
*** [[Tiso_gene_5857]]
−
** [[primary_network]]
+
** 1 reconstruction source(s) associated:
−
* [[annotation]]:
+
*** [[orthology-athaliana]]
−
** [[pathwaytools]]:
+
== Reaction(s) not found ==
−
*** [[experimental_annotation]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=GLUTACONYL-COA-DECARBOXYLASE-RXN GLUTACONYL-COA-DECARBOXYLASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=GLUTARYL-COA-DEHYDROG-RXN GLUTARYL-COA-DEHYDROG-RXN]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-33208}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27694 27694]
+
{{#set: taxonomic range=TAX-4751}}
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05070 R05070]
+
{{#set: common name=glutaryl-CoA degradation}}
−
* UNIPROT:
+
{{#set: reaction found=3}}
−
** [http://www.uniprot.org/uniprot/P55186 P55186]
+
{{#set: total reaction=5}}
−
** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
+
{{#set: completion rate=60.0}}
−
** [http://www.uniprot.org/uniprot/P05791 P05791]
+
−
** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
+
−
** [http://www.uniprot.org/uniprot/P44851 P44851]
+
−
** [http://www.uniprot.org/uniprot/Q02139 Q02139]
+
−
** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
+
−
** [http://www.uniprot.org/uniprot/P39522 P39522]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=2,3-Dihydroxy-3-methylvalerate dehydratase}}
+
−
{{#set: ec number=EC-4.2.1.9}}
+
−
{{#set: gene associated=Tiso_gene_1563}}
+
−
{{#set: in pathway=PWY-5103|ILEUSYN-PWY|PWY-5101|PWY-5104}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation}}
+

Latest revision as of 20:47, 21 March 2018

Pathway PWY-5177

Reaction(s) found

3 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5177&oldid=43746"