Difference between revisions of "PWY-5177"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOSIDE-DIPHOSPHATASE-RXN NUCLEOSIDE-DIPHOSPHATASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NUCLEOSIDE-DIPHOSPHATASE-RXN NUCLEOSIDE-DIPHOSPHATASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
** ORF
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** glutaryl-CoA degradation
* ec number:
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** [http://enzyme.expasy.org/EC/3.6.1.6 EC-3.6.1.6]
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* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''3''' reactions found over '''5''' reactions in the full pathway
** 1 [[Nucleoside-Diphosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Nucleoside-Monophosphates]][c]
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
* With common name(s):
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** 3 associated gene(s):
** 1 a nucleoside diphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 H+[c] '''+''' 1 a nucleoside 5'-monophosphate[c]
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*** [[Tiso_gene_16181]]
 
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*** [[Tiso_gene_15327]]
== Genes associated with this reaction  ==
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*** [[Tiso_gene_17451]]
Genes have been associated with this reaction based on different elements listed below.
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** 4 reconstruction source(s) associated:
* [[Tiso_gene_20236]]
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*** [[orthology-athaliana]]
** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-creinhardtii]]
* [[Tiso_gene_13653]]
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*** [[orthology-synechocystis]]
** EXPERIMENTAL_ANNOTATION
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*** [[orthology-esiliculosus]]
***AUTOMATED-NAME-MATCH
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* [[RXN-11662]]
* [[Tiso_gene_12899]]
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** 7 associated gene(s):
** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_16703]]
***EC-NUMBER
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*** [[Tiso_gene_14027]]
** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_14262]]
***EC-NUMBER
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*** [[Tiso_gene_14026]]
== Pathways  ==
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*** [[Tiso_gene_18838]]
== Reconstruction information  ==
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*** [[Tiso_gene_18839]]
* [[orthology]]:
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*** [[Tiso_gene_5857]]
** [[pantograph]]:
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** 5 reconstruction source(s) associated:
*** [[esiliculosus]]
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*** [[annotation-experimental_annotation]]
* [[annotation]]:
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*** [[orthology-athaliana]]
** [[pathwaytools]]:
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*** [[annotation-in-silico_annotation]]
*** [[experimental_annotation]]
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*** [[orthology-creinhardtii]]
*** [[in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-11667]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5857]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUTACONYL-COA-DECARBOXYLASE-RXN GLUTACONYL-COA-DECARBOXYLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUTARYL-COA-DEHYDROG-RXN GLUTARYL-COA-DEHYDROG-RXN]
 
== External links  ==
 
== External links  ==
* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33208}}
** [http://www.genome.jp/dbget-bin/www_bget?R00329 R00329]
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{{#set: taxonomic range=TAX-4751}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
{{#set: common name=ORF}}
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{{#set: common name=glutaryl-CoA degradation}}
{{#set: ec number=EC-3.6.1.6}}
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{{#set: reaction found=3}}
{{#set: gene associated=Tiso_gene_20236|Tiso_gene_13653|Tiso_gene_12899}}
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{{#set: total reaction=5}}
{{#set: in pathway=}}
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{{#set: completion rate=60.0}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:47, 21 March 2018

Pathway PWY-5177

Reaction(s) found

3 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links