Difference between revisions of "PWY-5697"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5331 PWY-5331] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
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[[Category:Pathway]]
 
[[Category:Pathway]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5331 PWY-5331] ==
 
* taxonomic range:
 
* taxonomic range:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
 
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
 
* common name:
 
* common name:
** glycolysis II (from fructose 6-phosphate)
+
** taurine biosynthesis
 
* Synonym(s):
 
* Synonym(s):
 +
** L-cysteine degradation IV
  
 
== Reaction(s) found ==
 
== Reaction(s) found ==
  '''11''' reactions found over '''11''' reactions in the full pathway
+
  '''2''' reactions found over '''4''' reactions in the full pathway
* [[2PGADEHYDRAT-RXN]]
+
* [[CYSTEAMINE-DIOXYGENASE-RXN]]
** 4 associated gene(s):
+
** 1 associated gene(s):
*** [[Tiso_gene_14718]]
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*** [[Tiso_gene_9748]]
*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_5619]]
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*** [[Tiso_gene_13317]]
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** 7 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
+
* [[3PGAREARR-RXN]]
+
** 16 associated gene(s):
+
*** [[Tiso_gene_2667]]
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*** [[Tiso_gene_9922]]
+
*** [[Tiso_gene_15048]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_5468]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
+
*** [[Tiso_gene_7201]]
+
** 7 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
*** [[orthology-creinhardtii]]
+
* [[6PFRUCTPHOS-RXN]]
+
** 2 associated gene(s):
+
*** [[Tiso_gene_5733]]
+
*** [[Tiso_gene_596]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[manual-primary_network]]
+
*** [[orthology-creinhardtii]]
+
* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
+
*** [[Tiso_gene_65]]
+
*** [[Tiso_gene_9119]]
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*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[orthology-creinhardtii]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-experimental_annotation]]
+
* [[F16BDEPHOS-RXN]]
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** 7 associated gene(s):
+
*** [[Tiso_gene_16502]]
+
*** [[Tiso_gene_8226]]
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*** [[Tiso_gene_9435]]
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*** [[Tiso_gene_4904]]
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*** [[Tiso_gene_3483]]
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*** [[Tiso_gene_15398]]
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*** [[Tiso_gene_4905]]
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** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[manual-primary_network]]
+
*** [[orthology-creinhardtii]]
+
* [[GAPOXNPHOSPHN-RXN]]
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** 5 associated gene(s):
+
*** [[Tiso_gene_20000]]
+
*** [[Tiso_gene_6766]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_235]]
+
** 7 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
*** [[orthology-creinhardtii]]
+
* [[PEPDEPHOS-RXN]]
+
** 4 associated gene(s):
+
*** [[Tiso_gene_14504]]
+
*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
+
** 7 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
*** [[orthology-creinhardtii]]
+
* [[PEPSYNTH-RXN]]
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** 0 associated gene:
+
 
** 2 reconstruction source(s) associated:
 
** 2 reconstruction source(s) associated:
 
*** [[annotation-in-silico_annotation]]
 
*** [[annotation-in-silico_annotation]]
*** [[annotation-experimental_annotation]]
 
* [[PHOSGLYPHOS-RXN]]
 
** 6 associated gene(s):
 
*** [[Tiso_gene_3527]]
 
*** [[Tiso_gene_18263]]
 
*** [[Tiso_gene_12104]]
 
*** [[Tiso_gene_3526]]
 
*** [[Tiso_gene_14642]]
 
*** [[Tiso_gene_18264]]
 
** 7 reconstruction source(s) associated:
 
*** [[annotation-experimental_annotation]]
 
 
*** [[orthology-esiliculosus]]
 
*** [[orthology-esiliculosus]]
 +
* [[CYSTEINE-DIOXYGENASE-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_1457]]
 +
** 3 reconstruction source(s) associated:
 
*** [[annotation-in-silico_annotation]]
 
*** [[annotation-in-silico_annotation]]
*** [[orthology-athaliana]]
 
*** [[orthology-synechocystis]]
 
*** [[manual-primary_network]]
 
 
*** [[orthology-creinhardtii]]
 
*** [[orthology-creinhardtii]]
* [[RXN-15513]]
 
** 8 associated gene(s):
 
*** [[Tiso_gene_7201]]
 
*** [[Tiso_gene_9922]]
 
*** [[Tiso_gene_2841]]
 
*** [[Tiso_gene_14530]]
 
*** [[Tiso_gene_9923]]
 
*** [[Tiso_gene_16271]]
 
*** [[Tiso_gene_2365]]
 
*** [[Tiso_gene_14664]]
 
** 2 reconstruction source(s) associated:
 
*** [[annotation-experimental_annotation]]
 
*** [[annotation-in-silico_annotation]]
 
* [[TRIOSEPISOMERIZATION-RXN]]
 
** 4 associated gene(s):
 
*** [[Tiso_gene_20000]]
 
*** [[Tiso_gene_19961]]
 
*** [[Tiso_gene_10646]]
 
*** [[Tiso_gene_19962]]
 
** 7 reconstruction source(s) associated:
 
*** [[annotation-experimental_annotation]]
 
 
*** [[orthology-esiliculosus]]
 
*** [[orthology-esiliculosus]]
*** [[annotation-in-silico_annotation]]
 
*** [[orthology-athaliana]]
 
*** [[orthology-synechocystis]]
 
*** [[manual-primary_network]]
 
*** [[orthology-creinhardtii]]
 
 
== Reaction(s) not found ==
 
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=HYPOTAURINE-DEHYDROGENASE-RXN HYPOTAURINE-DEHYDROGENASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=SULFINOALANINE-DECARBOXYLASE-RXN SULFINOALANINE-DECARBOXYLASE-RXN]
 
== External links  ==
 
== External links  ==
* ECOCYC:
 
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5484 PWY-5484]
 
{{#set: taxonomic range=TAX-2759}}
 
 
{{#set: taxonomic range=TAX-2}}
 
{{#set: taxonomic range=TAX-2}}
{{#set: taxonomic range=TAX-2157}}
+
{{#set: taxonomic range=TAX-40674}}
{{#set: common name=glycolysis II (from fructose 6-phosphate)}}
+
{{#set: common name=taurine biosynthesis}}
{{#set: reaction found=11}}
+
{{#set: common name=L-cysteine degradation IV}}
{{#set: total reaction=11}}
+
{{#set: reaction found=2}}
{{#set: completion rate=100.0}}
+
{{#set: total reaction=4}}
 +
{{#set: completion rate=50.0}}

Revision as of 16:21, 21 March 2018

Pathway PWY-5331

  • taxonomic range:
  • common name:
    • taurine biosynthesis
  • Synonym(s):
    • L-cysteine degradation IV

Reaction(s) found

2 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links