Difference between revisions of "PWY-5789"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRAZIN-RXN PYRAZIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** amidase * ec number: **...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-28889 TAX-2...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRAZIN-RXN PYRAZIN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-28889 TAX-28889]
 
* common name:
 
* common name:
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** amidase
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** 3-hydroxypropanoate/4-hydroxybutanate cycle
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.1.4 EC-3.5.1.4]
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* Synonym(s):
 
* Synonym(s):
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** 3-HP/4-HB cycle
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** 3-hydroxypropionate/4-hydroxybutyrate cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''16''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[PYRAZINAMIDE]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[PYRAZINOIC-ACID]][c]
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 H2O[c] '''+''' 1 pyrazinamide[c] '''=>''' 1 ammonium[c] '''+''' 1 pyrazine-2-carboxylate[c]
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*** [[Tiso_gene_16181]]
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*** [[Tiso_gene_15327]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_17451]]
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Genes have been associated with this reaction based on different elements listed below.
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** 4 reconstruction source(s) associated:
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* [[Tiso_gene_13682]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-creinhardtii]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-synechocystis]]
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== Pathways  ==
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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* [[annotation]]:
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** 4 associated gene(s):
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** [[pathwaytools]]:
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*** [[Tiso_gene_2812]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_3800]]
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*** [[Tiso_gene_5029]]
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*** [[Tiso_gene_7965]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[METHYLMALONYL-COA-MUT-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_9771]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[PROPIONYL-COA-CARBOXY-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5029]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[RXN-11002]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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* [[RXN-11662]]
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** 7 associated gene(s):
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*** [[Tiso_gene_16703]]
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*** [[Tiso_gene_14027]]
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*** [[Tiso_gene_14262]]
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*** [[Tiso_gene_14026]]
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*** [[Tiso_gene_18838]]
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*** [[Tiso_gene_18839]]
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*** [[Tiso_gene_5857]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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* [[RXN-11667]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5857]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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* [[RXN-6383]]
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** 3 associated gene(s):
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*** [[Tiso_gene_5857]]
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*** [[Tiso_gene_16703]]
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*** [[Tiso_gene_14257]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-EPIM-RXN METHYLMALONYL-COA-EPIM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8890 RXN-8890]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8891 RXN-8891]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8963 RXN-8963]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8974 RXN-8974]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9086 RXN-9086]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9087 RXN-9087]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9092 RXN-9092]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-28889}}
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{{#set: common name=amidase}}
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{{#set: common name=3-hydroxypropanoate/4-hydroxybutanate cycle}}
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{{#set: ec number=EC-3.5.1.4}}
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{{#set: common name=3-HP/4-HB cycle|3-hydroxypropionate/4-hydroxybutyrate cycle}}
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{{#set: gene associated=Tiso_gene_13682}}
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{{#set: reaction found=8}}
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{{#set: in pathway=}}
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{{#set: total reaction=16}}
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{{#set: reconstruction category=annotation}}
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{{#set: completion rate=50.0}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:18, 21 March 2018

Pathway PWY-5789

  • taxonomic range:
  • common name:
    • 3-hydroxypropanoate/4-hydroxybutanate cycle
  • Synonym(s):
    • 3-HP/4-HB cycle
    • 3-hydroxypropionate/4-hydroxybutyrate cycle

Reaction(s) found

8 reactions found over 16 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5789&oldid=40776"