Difference between revisions of "PWY-5856"

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(Created page with "Category:Gene == Gene Tiso_gene_2920 == * left end position: ** 8114 * transcription direction: ** POSITIVE * right end position: ** 9894 * centisome position: ** 45.12792...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.119-RXN 2.4.1.119-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** oligosaccharyl_tran...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_2920 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.119-RXN 2.4.1.119-RXN] ==
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* left end position:
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* direction:
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** 8114
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** oligosaccharyl_transferase
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* right end position:
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* ec number:
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** 9894
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** [http://enzyme.expasy.org/EC/2.4.99.18 EC-2.4.99.18]
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* centisome position:
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** 45.12792   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3-ISOPROPYLMALDEHYDROG-RXN]]
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* With identifiers:
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** experimental_annotation
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** 1 [[CPD-18076]][c] '''+''' 1 [[Protein-L-Asparagine]][c] '''=>''' 1 [[CPD-224]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-18077]][c]
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***ec-number
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* With common name(s):
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** [[pantograph]]-[[athaliana]]
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** 1 α-D-Glc-(1→2)-α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 a [protein]-L-asparagine[c] '''=>''' 1 a dolichyl diphosphate[c] '''+''' 1 H+[c] '''+''' 1 a [protein]-L-asparagine-[(glucosyl)3(mannosyl)9(N-acetylglucosaminyl)2][c]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Genes associated with this reaction  ==
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* [[IMDH]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_26]]
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* [[RXN-13158]]
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** Source: [[annotation-experimental_annotation]]
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** experimental_annotation
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*** Assignment: AUTOMATED-NAME-MATCH
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***ec-number
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_10448]]
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* [[RXN-14986]]
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** Source: [[annotation-in-silico_annotation]]
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** experimental_annotation
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*** Assignment: AUTOMATED-NAME-MATCH
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***ec-number
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[RXN-18200]]
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** experimental_annotation
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** '''19''' reactions found over '''19''' reactions in the full pathway
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***ec-number
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== Reconstruction information  ==
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* [[RXN-18202]]
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* Category: [[orthology]]
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** experimental_annotation
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** Source: [[orthology-esiliculosus]]
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***ec-number
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*** Tool: [[pantograph]]
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* [[RXN-18204]]
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* Category: [[annotation]]
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** experimental_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Tool: [[pathwaytools]]
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* [[RXN-18206]]
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** Source: [[annotation-experimental_annotation]]
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** experimental_annotation
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*** Tool: [[pathwaytools]]
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***ec-number
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* [[RXN-18208]]
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** experimental_annotation
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***ec-number
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* [[RXN-18210]]
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** experimental_annotation
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***ec-number
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* [[RXN-7745]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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* [[RXNQT-4165]]
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** experimental_annotation
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***ec-number
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* [[RXNQT-4168]]
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** experimental_annotation
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***ec-number
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* [[RXNQT-4171]]
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** experimental_annotation
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***ec-number
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* [[RXNQT-4174]]
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** experimental_annotation
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***ec-number
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* [[RXNQT-4178]]
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** experimental_annotation
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***ec-number
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== Pathways associated ==
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* [[PWYQT-4450]]
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* [[PWY-7396]]
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* [[PWY-5101]]
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* [[LEUSYN-PWY]]
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* [[PWY-6871]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=8114}}
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* UNIPROT:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.uniprot.org/uniprot/P39656 P39656]
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{{#set: right end position=9894}}
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** [http://www.uniprot.org/uniprot/P48440 P48440]
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{{#set: centisome position=45.12792    }}
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** [http://www.uniprot.org/uniprot/P41543 P41543]
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{{#set: reaction associated=3-ISOPROPYLMALDEHYDROG-RXN|IMDH|RXN-13158|RXN-14986|RXN-18200|RXN-18202|RXN-18204|RXN-18206|RXN-18208|RXN-18210|RXN-7745|RXNQT-4165|RXNQT-4168|RXNQT-4171|RXNQT-4174|RXNQT-4178}}
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** [http://www.uniprot.org/uniprot/P80896 P80896]
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{{#set: pathway associated=PWYQT-4450|PWY-7396|PWY-5101|LEUSYN-PWY|PWY-6871}}
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** [http://www.uniprot.org/uniprot/P80897 P80897]
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** [http://www.uniprot.org/uniprot/P48439 P48439]
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** [http://www.uniprot.org/uniprot/P46964 P46964]
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** [http://www.uniprot.org/uniprot/Q92316 Q92316]
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** [http://www.uniprot.org/uniprot/Q10176 Q10176]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=oligosaccharyl_transferase}}
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{{#set: ec number=EC-2.4.99.18}}
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{{#set: gene associated=Tiso_gene_26|Tiso_gene_10448}}
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{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:22, 21 March 2018

Reaction 2.4.1.119-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • oligosaccharyl_transferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 α-D-Glc-(1→2)-α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] + 1 a [protein]-L-asparagine[c] => 1 a dolichyl diphosphate[c] + 1 H+[c] + 1 a [protein]-L-asparagine-[(glucosyl)3(mannosyl)9(N-acetylglucosaminyl)2][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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