Difference between revisions of "PWY-5856"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.119-RXN 2.4.1.119-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** oligosaccharyl_tran...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5856 PWY-5856] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.119-RXN 2.4.1.119-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5856 PWY-5856] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** oligosaccharyl_transferase
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** ubiquinol-9 biosynthesis (prokaryotic)
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* ec number:
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** [http://enzyme.expasy.org/EC/2.4.99.18 EC-2.4.99.18]
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* Synonym(s):
 
* Synonym(s):
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** Q9 biosynthesis
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** ubiquinone-9 biosynthesis (prokaryotic)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''8''' reactions in the full pathway
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** 1 [[CPD-18076]][c] '''+''' 1 [[Protein-L-Asparagine]][c] '''=>''' 1 [[CPD-224]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-18077]][c]
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* [[2.5.1.39-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 α-D-Glc-(1→2)-α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 a [protein]-L-asparagine[c] '''=>''' 1 a dolichyl diphosphate[c] '''+''' 1 H+[c] '''+''' 1 a [protein]-L-asparagine-[(glucosyl)3(mannosyl)9(N-acetylglucosaminyl)2][c]
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*** [[Tiso_gene_11582]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* Gene: [[Tiso_gene_26]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.64-RXN 2.1.1.64-RXN]
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** Source: [[annotation-experimental_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9238 RXN-9238]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9239 RXN-9239]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9240 RXN-9240]
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* Gene: [[Tiso_gene_10448]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9241 RXN-9241]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9242 RXN-9242]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9243 RXN-9243]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** '''19''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P39656 P39656]
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{{#set: common name=ubiquinol-9 biosynthesis (prokaryotic)}}
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** [http://www.uniprot.org/uniprot/P48440 P48440]
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{{#set: common name=Q9 biosynthesis|ubiquinone-9 biosynthesis (prokaryotic)}}
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** [http://www.uniprot.org/uniprot/P41543 P41543]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P80896 P80896]
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{{#set: total reaction=8}}
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** [http://www.uniprot.org/uniprot/P80897 P80897]
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{{#set: completion rate=13.0}}
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** [http://www.uniprot.org/uniprot/P48439 P48439]
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** [http://www.uniprot.org/uniprot/P46964 P46964]
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** [http://www.uniprot.org/uniprot/Q92316 Q92316]
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** [http://www.uniprot.org/uniprot/Q10176 Q10176]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=oligosaccharyl_transferase}}
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{{#set: ec number=EC-2.4.99.18}}
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{{#set: gene associated=Tiso_gene_26|Tiso_gene_10448}}
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{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:42, 21 March 2018

Pathway PWY-5856

  • taxonomic range:
  • common name:
    • ubiquinol-9 biosynthesis (prokaryotic)
  • Synonym(s):
    • Q9 biosynthesis
    • ubiquinone-9 biosynthesis (prokaryotic)

Reaction(s) found

1 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5856&oldid=43354"