Difference between revisions of "PWY-5989"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R313-RXN R313-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_nitrile_hydratase *...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R313-RXN R313-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** probable_nitrile_hydratase
+
** stearate biosynthesis II (bacteria and plants)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/4.2.1.84 EC-4.2.1.84]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** stearic acid biosynthesis
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''5''' reactions found over '''6''' reactions in the full pathway
−
** 1 [[3-CYANOPYRIDINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NIACINAMIDE]][c]
+
* [[RXN-16380]]
−
* With common name(s):
+
** 10 associated gene(s):
−
** 1 3-cyanopyridine[c] '''+''' 1 H2O[c] '''=>''' 1 nicotinamide[c]
+
*** [[Tiso_gene_10876]]
−
 
+
*** [[Tiso_gene_9394]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_136]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[Tiso_gene_12275]]
−
* [[Tiso_gene_4032]]
+
*** [[Tiso_gene_7855]]
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_500]]
−
***EC-NUMBER
+
*** [[Tiso_gene_13394]]
−
== Pathways  ==
+
*** [[Tiso_gene_348]]
−
* [[P345-PWY]], aldoxime degradation: [http://metacyc.org/META/NEW-IMAGE?object=P345-PWY P345-PWY]
+
*** [[Tiso_gene_4191]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
*** [[Tiso_gene_135]]
−
== Reconstruction information  ==
+
** 3 reconstruction source(s) associated:
−
* [[annotation]]:
+
*** [[annotation-experimental_annotation]]
−
** [[pathwaytools]]:
+
*** [[orthology-creinhardtii]]
−
*** [[in-silico_annotation]]
+
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-9632]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_5939]]
 +
*** [[Tiso_gene_15991]]
 +
*** [[Tiso_gene_14485]]
 +
*** [[Tiso_gene_19302]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9633]]
 +
** 7 associated gene(s):
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_9885]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_13083]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9634]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_6884]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-9635]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_10778]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9548 RXN-9548]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: taxonomic range=TAX-33090}}
−
{{#set: common name=probable_nitrile_hydratase}}
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: ec number=EC-4.2.1.84}}
+
{{#set: common name=stearate biosynthesis II (bacteria and plants)}}
−
{{#set: gene associated=Tiso_gene_4032}}
+
{{#set: common name=stearic acid biosynthesis}}
−
{{#set: in pathway=P345-PWY}}
+
{{#set: reaction found=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: total reaction=6}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: completion rate=83.0}}
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:31, 21 March 2018

Pathway PWY-5989

  • taxonomic range:
  • common name:
    • stearate biosynthesis II (bacteria and plants)
  • Synonym(s):
    • stearic acid biosynthesis

Reaction(s) found

5 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5989&oldid=42121"